RnoEX6004434 @ rn6
Exon Skipping
Gene
ENSRNOG00000011367 | Cyp2r1
Description
cytochrome P450, family 2, subfamily r, polypeptide 1 [Source:RGD Symbol;Acc:1311866]
Coordinates
chr1:184093920-184097229:-
Coord C1 exon
chr1:184096597-184097229
Coord A exon
chr1:184095525-184095854
Coord C2 exon
chr1:184093920-184094294
Length
330 bp
Sequences
Splice sites
3' ss Seq
TTAACACGTTTCTCTAACAGGAC
3' ss Score
10.68
5' ss Seq
TAGGTAAGA
5' ss Score
9.14
Exon sequences
Seq C1 exon
TGCTATTGAAACATACAAAGGTAGACCTTTTGACCTCAAGCAACTGATAACAAATGCTGTTTCAAACATAACTAACCTTATCCTTTTTGGAGAACGATTCACTTATGAAGACACTGATTTTCAGCACATGATTGAGTTATTCAGTGAGAATGTCGAACTAGCTGCCAGTGCTCCGGTCTTCCTTTACAATGCATTTCCATGGATTGGCATCTTACCTTTCGGAAAACATCAAAGGCTATTTAGAAATGCAGATGTGGTCTATGATTTCCTCTCCAAACTTATTGAAAAAGCTGCAGTAAATAGAAAGCCTCATTTGCCTCAGAATTTTGTTGATGCCTATTTAGATGAGATGGATAAAGGTCAAAATGATCCTTTATCTACGTTCTCCAAAGAGAATCTAATTTTCTCAGTGGGTGAACTCATCATTGCTGGAACTGAAACTACAACCAATGTGCTCCGCTGGGCAGTTCTGTTCATGGCCCTTTATCCTAATATTCAAG
Seq A exon
GACAAGTTCATAAAGAGATTGATTTAATTATGGGACACGACAGGAGGCCTTCTTGGGAAGACAAATGCAAAATGCCTTATACTGAAGCAGTTTTGCATGAAGTTTTAAGATTCTGTAATATAGTTCCACTGGGGATTTTCCATGCAACTTCTGAAGATGCAGTTGTACGTGGCTATTCCATTCCTAAAGGCACAACAGTCATTACAAATCTTTATTCTGTTCACTTTGATGAAAAGTACTGGAAAGACCCAGACATGTTCTATCCTGAGCGATTTCTGGACAGCAGTGGATATTTTACTAAAAAGGAAGCTTTGATTCCTTTTTCTCTAG
Seq C2 exon
GGAGAAGACACTGTCTTGGAGAACAGCTGGCTCGGATGGAAATGTTCTTGTTTTTTACATCATTGCTTCAGCAATTTCATTTGCATTTCCCACACGAACTAGTTCCAAACTTGAAACCCAGGTTGGGCATGACATTACAACCCCAGGCCTACCTCATCTGTGCAGAAAGACGCTGAAAGAGCACAAATATATTGGGAATAACCTTGTTCAATCGATAATGGTGTTTAGGCCAAAGATACAGTTTTAAAAAGCCAAATAAACACAAATACATCGCTTAAAATAGTACTAGAGCAATAACAAGCATTAGTTATTTTTTTCAAACTTCCATGAATTCTTATTGTAGAATGTATTGAACAGCACAAAGGTACAAGTGTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000011367-'5-4,'5-3,6-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(48.7=100)
A:
PF0006717=p450=FE(25.4=100)
C2:
PF0006717=p450=PD(12.5=91.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCATTTCCATGGATTGGCATC
R:
GAGCCAGCTGTTCTCCAAGAC
Band lengths:
344-674
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]