HsaEX6000952 @ hg38
Exon Skipping
Gene
ENSG00000186104 | CYP2R1
Description
cytochrome P450 family 2 subfamily R member 1 [Source:HGNC Symbol;Acc:HGNC:20580]
Coordinates
chr11:14877440-14880768:-
Coord C1 exon
chr11:14880136-14880768
Coord A exon
chr11:14879114-14879443
Coord C2 exon
chr11:14877440-14878297
Length
330 bp
Sequences
Splice sites
3' ss Seq
GAATACTTTTTCTCTGACAGGAC
3' ss Score
8.68
5' ss Seq
TAGGTAAGA
5' ss Score
9.14
Exon sequences
Seq C1 exon
TGCTATTGAAACATACAAAGGTAGACCTTTTGACTTTAAACAGTTAATAACGAATGCTGTTTCAAACATAACCAATCTGATCATTTTTGGAGAACGATTCACTTATGAAGACACCGATTTTCAGCACATGATTGAGTTATTTAGTGAAAATGTGGAACTAGCTGCCAGTGCCTCAGTCTTCTTGTATAATGCCTTTCCATGGATTGGCATCCTGCCTTTTGGAAAACATCAACAGCTGTTTAGAAATGCAGCTGTAGTCTATGATTTTCTCTCCAGACTCATTGAAAAAGCTTCAGTCAACAGAAAGCCTCAGCTACCTCAGCATTTTGTTGATGCTTATTTAGATGAGATGGATCAAGGTAAAAATGACCCATCATCTACTTTCTCCAAAGAAAACCTAATTTTCTCAGTGGGTGAACTCATCATTGCTGGAACTGAAACTACAACCAATGTGCTACGGTGGGCGATTCTTTTCATGGCCCTTTATCCTAATATTCAAG
Seq A exon
GACAAGTTCAGAAAGAGATTGATTTAATTATGGGCCCTAATGGGAAGCCTTCTTGGGACGACAAATGCAAAATGCCTTATACTGAGGCAGTTTTGCATGAAGTTTTAAGATTCTGTAATATAGTTCCATTAGGGATTTTCCATGCAACCTCTGAAGATGCAGTTGTACGTGGTTATTCCATTCCTAAAGGCACAACAGTAATTACAAATCTTTATTCTGTACACTTTGATGAAAAGTACTGGAGAGACCCAGAAGTGTTCCATCCTGAGCGATTTCTGGACAGCAGTGGATATTTTGCCAAGAAGGAAGCTTTGGTTCCTTTTTCCCTAG
Seq C2 exon
GAAGAAGACATTGTCTTGGAGAACACTTGGCTCGGATGGAAATGTTCTTGTTTTTTACAGCATTGCTTCAGAGGTTTCATTTGCATTTTCCACATGAACTAGTTCCAGATCTGAAGCCCAGGTTAGGCATGACATTGCAGCCCCAACCCTACCTCATCTGTGCTGAAAGACGCTGAAACTGCCTGGGATGTTTTCGGGAACAAGAATGTATATTTGCCTTATCCCTGAACTTGGTTTAATCAAATCAATGTGTGTATTAGAATAAAAGTCACAGCATCAAAAAGCCAAATGAACACAGATGTGTCTTAAAATAGTACTAGAGCAGAAACAAGCACTAGTCGTGATTGTTTTTCAAGATTTTATGACTTCTGGGGTAAAATTCTCTGTTGAGAGACACAAAGGTGCAAATGATGGGTGTTGCTTAAAATGCTAAGAAGGGTCATGGACGCCCTAAGCTGAGCATCTTGTTTAGTACCAGGTACTTTCATCCCTTCTTGACT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000186104-'15-21,'15-16,17-21
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.040 A=0.007 C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(46.0=100)
A:
PF0006717=p450=FE(24.0=100)
C2:
PF0006717=p450=PD(11.8=91.5)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCCTTTCCATGGATTGGCAT
R:
CATCCGAGCCAAGTGTTCTCC
Band lengths:
349-679
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains