DreEX6005327 @ danRer10
Exon Skipping
Gene
ENSDARG00000056587 | cyp2r1
Description
cytochrome P450, family 2, subfamily R, polypeptide 1 [Source:ZFIN;Acc:ZDB-GENE-110114-1]
Coordinates
chr7:27423926-27426041:+
Coord C1 exon
chr7:27423926-27424555
Coord A exon
chr7:27424654-27424980
Coord C2 exon
chr7:27425064-27426041
Length
327 bp
Sequences
Splice sites
3' ss Seq
TTTTTTTCCCTTCCATTCAGAAA
3' ss Score
10.57
5' ss Seq
TAGGTAAAA
5' ss Score
6.02
Exon sequences
Seq C1 exon
TGCCATTGACCAGCACCAAGGCAAGCCCTTTAACCCCAAGCATCTGGTGACCAATGCGGTGTCCAATATCACCAACCTCATCATCTTTGGCCAGCGCTTCACCTATGACGATGGGGATTTTCAGCACATGATTGAGATCTTCAGTGAGAATGTGGAGCTGGCAGCCAGCAGTTGGGCTTTCCTGTACAACGCCTTCCCCTGGATGGAGTACCTGCCCTTTGGGAAGCACCAGAGGCTGTTCCGCAATGCCAACGAGGTCTATAAGTTCCTCCTGCAAATCATCAGGCGCTTCTCGCAGGGCAGGGTTCCCCAGTCGCCGCAACATTACATTGATGCCTACTTGGACGAAATGGAGCAAAGCACCCCTGATAAAGCCACTTCTTTCTCTCAAGACAATCTGATTTTCTCAGTTGGAGAACTGATCATCGCGGGCACAGAAACCACCACTAATTGTCTGCGCTGGGCTATGCTCTACATGGCTCTGTATCCCAGGATACAAG
Seq A exon
AAAAGGTCCAAATGGAGATCGATAGTGTTCTGAATGGCAGACAGCCTGCTTTTGAAGACAGGCAGAGGATGCCGTATGTGGAGGCAGTGTTGCATGAAGTCCTGCGCCTCTGCAATATCGTCCCACTGGGAATCTTCCGCGCCACGTCTCAAGACGCAGTGGTGCGTGGCTACACCATTCCCAAGGGCACCATGGTCATCACTAACTTGTACTCTGTACACTTTGATGAGAAGTACTGGAGCGACCCGTCAATCTTCTGCCCAGAGCGCTTTCTAGACTGCAATGGCAAATTCATCCGACATGAAGCGTTTCTCCCCTTCTCCATAG
Seq C2 exon
GTAAGCGACACTGTTTGGGAGAGCAGCTGGCCAGGCTGGAGATGTTCTTGTTCTTTACTACATTGCTCCAGAGGTTTCACCTTCAGTTCTCAGAAGGCTTTATTCCGAGCCTCTCAGCGAAATTGGGCATGACCCTTCAGCCTCAGCCGTATTCCATATGTGCCATCAGGAGGCAGCAGTAAAACTTTCCAGCTTTGAGCTCTGGAACGCGTGCACTCACCTCAGGGGATCCTACCAAGAAACGTCAAAGGCAGAGCAGTTTCCAAGTCTTAAATTCCATCCCGTTTTCAACGGGTAATACTGACCTCTGATGTTGACTTGCTAAATTCTCTGAACGTGTCCTCTTTAGTTTCACAGAAACCAGCCTGAGAGTGATAAGAGTACTGTTACAGAACATGCTGTGAGGCGCACAGAATGAGCACATGTGTGTTACCGAACACGGACCTATAAGAGTTTCAAGATGAAGTGTAGCATGTATCTTTGATAACTTGAACTGAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000056587-'17-17,'17-16,18-17=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=PD(71.9=98.8)
A:
PF0006717=p450=FE(24.0=100)
C2:
PF0006717=p450=PD(11.9=88.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCAAATCATCAGGCGCTTCT
R:
ATGCCCAATTTCGCTGAGAGG
Band lengths:
358-685
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]