MmuEX6013351 @ mm10
Exon Skipping
Gene
ENSMUSG00000030670 | Cyp2r1
Description
cytochrome P450, family 2, subfamily r, polypeptide 1 [Source:MGI Symbol;Acc:MGI:2449771]
Coordinates
chr7:114549682-114553353:-
Coord C1 exon
chr7:114552721-114553353
Coord A exon
chr7:114551753-114552082
Coord C2 exon
chr7:114549682-114550447
Length
330 bp
Sequences
Splice sites
3' ss Seq
TTAACATGTTTCTCTGACAGGAC
3' ss Score
10.53
5' ss Seq
TAGGTAAGA
5' ss Score
9.14
Exon sequences
Seq C1 exon
TGCTATTGAAACATACAAAGGTGGACCTTTTGACCTCAAGCAACTGATAACAAATGCTGTTTCAAACATAACTAACCTTATCCTTTTTGGAGAACGATTCACTTATGAAGACACTGATTTTCAGCACATGATTGAATTATTTAGTGAGAATGTGGAACTAGCTGCCAGTGCTCCAGTCTTCCTTTATAATGCATTTCCATGGATTGGCATCTTACCTTTTGGGAAACATCAAAGACTATTTAGAAATGCAGATGTGGTCTATGATTTCCTCTCCAGACTTATTGAAAAAGCTGCAGTCAATAGAAAGCCTCATTTACCTCACCATTTTGTTGATGCCTATTTAGATGAGATGGATCAAGGTCAAAATGATCCTTTATCTACATTTTCCAAAGAGAATCTAATTTTTTCAGTGGGTGAACTCATCATTGCTGGAACTGAAACTACAACCAATGTGCTCCGCTGGGCAATTCTTTTCATGGCCCTTTATCCTAATATTCAAG
Seq A exon
GACAAGTTCATAAAGAGATTGATTTAATTGTGGGCCACAACAGGAGACCTTCTTGGGAATACAAATGCAAAATGCCTTATACTGAAGCAGTTTTACATGAAGTTTTAAGATTCTGTAATATAGTTCCACTGGGAATTTTCCATGCAACTTCGGAAGATGCAGTTGTACGTGGCTATTCCATTCCTAAAGGCACAACAGTCATTACAAATCTTTATTCTGTTCACTTTGATGAAAAGTACTGGAAAGATCCAGACATGTTCTATCCTGAGCGATTTCTGGACAGCAATGGATATTTTACTAAAAAGGAAGCTTTGATTCCTTTTTCTCTAG
Seq C2 exon
GGAGAAGACATTGTCTTGGAGAACAGCTGGCTCGAATGGAAATGTTCTTGTTTTTTACATCATTACTTCAGCAATTTCATTTGCATTTTCCACATGAACTAGTTCCAAATCTGAAGCCCAGGTTGGGCATGACATTACAACCCCAGCCCTACCTCATCTGTGCAGAAAGACGCTGAAAGTGCAAAATGTATTGGGGAATAACCTTGTTGAATCACAATAATGGTGTTTGGGCCAAAGCCACATTTTTATAAAGCCAAGTAAACACAAATACACTGTTTAAAATAGTACTAGAGCAATAACAAGCATTAATTATGTTATTTTTTTTAATTTCCATGAATTCTTATTGTAGATTGAAGAGCACAAAGGTACAGGTGTTATGAAGACACTTAGAAGGGCCATGGATGCTCTAAACAAAGCTCTTGCTAGGATAAGGTTCTTCTCATCTGTCTCCATCCTAAGGAACTTTACTCCCTAACTAACACCCTTAATGGTGAGGTGTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000030670-'5-13,'5-9,6-13=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=PU(42.9=99.2)
A:
PF0006717=p450=PD(1.2=0.9),PF0006717=p450=FE(62.1=100)
C2:
PF0006717=p450=PD(18.7=91.5)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCATTTCCATGGATTGGCATC
R:
TTCCATTCGAGCCAGCTGTTC
Band lengths:
352-682
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types