GgaEX0008569 @ galGal3
Exon Skipping
Gene
ENSGALG00000006050 | F1NB14_CHICK
Description
NA
Coordinates
chr5:11498130-11501831:-
Coord C1 exon
chr5:11501199-11501831
Coord A exon
chr5:11499201-11499530
Coord C2 exon
chr5:11498130-11498305
Length
330 bp
Sequences
Splice sites
3' ss Seq
CTTATTCCTTTTCCTAACAGGAC
3' ss Score
11.09
5' ss Seq
TAGGTAAAA
5' ss Score
6.02
Exon sequences
Seq C1 exon
TGCCATTGATACCTACAAAGGCAGACCATTTGATCTTAAGCACTTGATAACAAATGCTGTTTCAAACATTACTAATTTGATTATTTTTGGAGAACGTTTTACATATGAAGATACTGAATTTCAGCACATGATTGAGATTTTCAGTGAAAATATTGAATTAGCTGCTAGTGCCTCTGTATTTTTATATAATGCTTTTCCTTGGATTGGTATCTTGCCATTTGGGAAACACCAGCAGCTGTTTAAAAATGCAGCTGAAGTCTATGACTTTCTTCATAAGCTTATAGAACGAGTCTCTGAAAATAGGAAATCCCAGTCACCTCGACACTTTATAGATGCATACTTAGATGAGATGGATTGCAACAAAAATGATCCAGAATCAACGTATTCAAGAGAAAACTTAATTTTCTCTGTTGGAGAACTCATCATAGCGGGGACGGAAACCACAACAAATGTTTTAAGATGGGCAGTGTTATTTATGGCTCTTTATCCAAACATTCAAG
Seq A exon
GACATGTTCAAAAAGAGATCGATTTAGTCATCGGCCCAAACAAAATGCCTGCTTTGGAAGAGAAATGTAAAATGCCATATACTGAGGCTGTTCTCCATGAAGTTCTAAGATTCTGTAATATAGTTCCACTAGGTATTTTTCACGCAACCTCCAAAGATACTGTTGTACGTGGTTACTCTATTCCTGAAGGCACTACAGTTATTACAAACCTCTACTCTGTACATTTTGATGAAAAATACTGGAACAACCCAGAAGTGTTTTTTCCTGAGAGATTTTTGGACAGCAATGGACAGTTTGTCAAGAAAGATGCATTTATTCCTTTTTCATTAG
Seq C2 exon
GAAGACGACACTGTCTTGGAGAACAGCTAGCTCGAATGGAACTGTTTTTGTTTTTCACTTCGTTACTACAACGATTTCACCTGCGTTTTCCTCATGGTGGGATTCCAGATCTCAAACCAAGATTAGGCATGACATTACAACCACAGCCATACCTCATTTGTGCAGAAAGACGATGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006050-'5-4,'5-3,7-4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(46.2=100)
A:
PF0006717=p450=FE(24.1=100)
C2:
PF0006717=p450=PD(11.8=91.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGAAATCCCAGTCACCTCGA
R:
GCTGTGGTTGTAATGTCATGCC
Band lengths:
346-676
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]