BtaEX6059268 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000043981 | SBF2
Description
Bos taurus SET binding factor 2 (SBF2), mRNA. [Source:RefSeq mRNA;Acc:NM_001103237]
Coordinates
chr15:43277150-43400000:+
Coord C1 exon
chr15:43277150-43277299
Coord A exon
chr15:43344328-43344396
Coord C2 exon
chr15:43399830-43400000
Length
69 bp
Sequences
Splice sites
3' ss Seq
TTCTCTTTGTTTTCTTTAAGGAT
3' ss Score
10.92
5' ss Seq
AGGGTAAGT
5' ss Score
10.45
Exon sequences
Seq C1 exon
ACCCTTCCTGCTGCATTGAGAGCCCTTAAAGGAAAGGCAGCAAGACAGTGTCTCACTGATGAGCTGGGTTTACATGTTCAGCAGAACCGGGCAATATTAGATCATCAGCAGTTTGACTACATAATAAGGATGATGAACTGTACTCTACAG
Seq A exon
GATTGTTCCAGTTTAGAAGAATATAACATTGCTGCAGCATTACTCCCTCTGACTAGTGCTTTCTATAGG
Seq C2 exon
AAACTGGCCCCTGGAGTCAGCCAGTTTGCTTACACCTGTGTACAGGACCACCCCATTTGGACGAATCAGCAGTTTTGGGAGACAACCTTTTATAATGCGGTGCAGGAACAGGTTCGCTCCCTGTATCTCTCGGCCAAGGAGGACAATCATGCCCTGCATCTGAAGCAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000043981-'28-45,'28-41,32-45=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.053
Domain overlap (PFAM):
C1:
PF123353=SBF2=FE(44.5=100)
A:
PF123353=SBF2=FE(9.7=100)
C2:
PF123353=SBF2=FE(24.7=100)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAAAGGCAGCAAGACAGTGT
R:
AATGGGGTGGTCCTGTACACA
Band lengths:
177-246
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]