RnoEX0078172 @ rn6
Exon Skipping
Gene
ENSRNOG00000009812 | Sbf2
Description
SET binding factor 2 [Source:RGD Symbol;Acc:1588657]
Coordinates
chr1:175019401-175200563:-
Coord C1 exon
chr1:175200414-175200563
Coord A exon
chr1:175171303-175171371
Coord C2 exon
chr1:175019401-175019571
Length
69 bp
Sequences
Splice sites
3' ss Seq
TTGCCTTTGTTTTCTTCAAGGAT
3' ss Score
9.34
5' ss Seq
AGGGTGAGT
5' ss Score
9.25
Exon sequences
Seq C1 exon
ACTCTTCCCGCTGCCTTGAGGGCCCTTAAAGGAAAAGCAGCAAGACAGTGTCTCACTGATGAACTGGGTTTGCATGTTCAGCAGAACCGGGCAATATTGGACCATCAACAGTTTGACTACATAATAAGGATGATGAATTGTACTCTGCAG
Seq A exon
GATTGTTCAAGTTTGGAAGAGTATAACATCGCTGCAGCACTGCTCCCCCTGACCAGTGCTTTCTATAGG
Seq C2 exon
AGACTCGCCCCAGGAGTCAGCCAGTTTGCCTACACGTGTGTGCAGGACCACCCCATCTGGACTAATCAGCAGTTTTGGGAGACAACGTTTTACAGTGCAGTGCAGGAGCAGGTTCGCTCCCTGTACCTCTCAGCGAAGGAAGACAATCATACCCCACATCAGAAGCAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000009812_CASSETTE3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.228
Domain overlap (PFAM):
C1:
PF123353=SBF2=FE(21.7=100)
A:
PF123353=SBF2=FE(17.2=100)
C2:
PF123353=SBF2=FE(24.8=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGAACCGGGCAATATTGGA
R:
GCTCCTGCACTGCACTGTAAA
Band lengths:
179-248
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]