DreEX0064260 @ danRer10
Exon Skipping
Gene
ENSDARG00000059460 | sbf2
Description
SET binding factor 2 [Source:ZFIN;Acc:ZDB-GENE-030911-10]
Coordinates
chr7:66806668-66855771:+
Coord C1 exon
chr7:66806668-66806817
Coord A exon
chr7:66830423-66830491
Coord C2 exon
chr7:66855601-66855771
Length
69 bp
Sequences
Splice sites
3' ss Seq
TTATCTGTGTTTAATTGCAGGAC
3' ss Score
10.41
5' ss Seq
CGGGTAAGT
5' ss Score
10.75
Exon sequences
Seq C1 exon
ACGCTTCCCGCAGCTCTCCGGGCCCTGAAAGGCAAGGCCGCACGCCAGTGTCTGACCGAAGAGCTAAGCCATCATGTGCAGCAGAACCGCGCCATTCTGGACCACCAGCAGTTTGATCATATTGTCCGCATGATGAACTGCGCTCTACAG
Seq A exon
GACTGCTCCAGCTCAGAGGAATACACTGTAGCCGCAGCACTGCTGCCCTTGACCACAGCCTTTTACCGG
Seq C2 exon
AAACTGGCAGCTGGAGTGGATCAGTTCGCCTACACCTGCATCCAGGAGCATCCCATCTGGACCAATCAGCAGTTCTGGGAGGCCACTTTCTACTCGGAGGTGCAAAACCAGATCAGAGCGCTTTACCTCACTGCCCCTGAGGACAAGCCACTCATCACTGCCAAGATCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000059460-'17-21,'17-18,18-21
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.018
Domain overlap (PFAM):
C1:
PF123353=SBF2=FE(21.3=100)
A:
PF123353=SBF2=FE(9.6=100)
C2:
PF123353=SBF2=FE(24.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGCCATCATGTGCAGCAGAA
R:
AGAAAGTGGCCTCCCAGAACT
Band lengths:
176-245
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]