MmuEX6013135 @ mm9
Exon Skipping
Gene
ENSMUSG00000038371 | Sbf2
Description
SET binding factor 2 [Source:MGI Symbol;Acc:MGI:1921831]
Coordinates
chr7:117521478-117564455:-
Coord C1 exon
chr7:117564306-117564455
Coord A exon
chr7:117542810-117542878
Coord C2 exon
chr7:117521478-117521648
Length
69 bp
Sequences
Splice sites
3' ss Seq
TTGCCTTTGTTTCCTTTAAGGAT
3' ss Score
10.82
5' ss Seq
AGGGTAAGT
5' ss Score
10.45
Exon sequences
Seq C1 exon
ACCCTTCCTGCTGCCTTGAGGGCCCTTAAAGGAAAAGCAGCAAGACAGTGTCTCACTGATGAACTGGGCTTGCACGTTCAGCAGAACCGGGCAATACTGGACCATCAACAGTTTGACTACATAATAAGGATGATGAACTGTACTCTACAG
Seq A exon
GATTGTTCAAGTTTAGAAGAATATAACATCGCTGCAGCATTACTCCCCCTGACCAGTGCTTTCTATAGG
Seq C2 exon
AAACTTGCCCCTGGAGTCAGCCAGTTTGCCTACACCTGTGTACAGGACCACCCCATTTGGACAAATCAGCAGTTTTGGGAGACAACTTTTTACAATGCAGTACAGGAGCAGGTTCGCTCCCTGTATCTCTCAGCAAAGGACGACAATCATATCCCACATCTGAAGCAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000038371-'26-27,'26-26,28-27=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.088
Domain overlap (PFAM):
C1:
PF123353=SBF2=FE(21.8=100)
A:
PF123353=SBF2=FE(9.8=100)
C2:
PF123353=SBF2=FE(24.9=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGCAAGACAGTGTCTCACT
R:
AATGGGGTGGTCCTGTACACA
Band lengths:
171-240
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: