MmuEX6013135 @ mm10
Exon Skipping
Gene
ENSMUSG00000038371 | Sbf2
Description
SET binding factor 2 [Source:MGI Symbol;Acc:MGI:1921831]
Coordinates
chr7:110377964-110420941:-
Coord C1 exon
chr7:110420792-110420941
Coord A exon
chr7:110399296-110399364
Coord C2 exon
chr7:110377964-110378134
Length
69 bp
Sequences
Splice sites
3' ss Seq
TTGCCTTTGTTTCCTTTAAGGAT
3' ss Score
10.82
5' ss Seq
AGGGTAAGT
5' ss Score
10.45
Exon sequences
Seq C1 exon
ACCCTTCCTGCTGCCTTGAGGGCCCTTAAAGGAAAAGCAGCAAGACAGTGTCTCACTGATGAACTGGGCTTGCACGTTCAGCAGAACCGGGCAATACTGGACCATCAACAGTTTGACTACATAATAAGGATGATGAACTGTACTCTACAG
Seq A exon
GATTGTTCAAGTTTAGAAGAATATAACATCGCTGCAGCATTACTCCCCCTGACCAGTGCTTTCTATAGG
Seq C2 exon
AAACTTGCCCCTGGAGTCAGCCAGTTTGCCTACACCTGTGTACAGGACCACCCCATTTGGACAAATCAGCAGTTTTGGGAGACAACTTTTTACAATGCAGTACAGGAGCAGGTTCGCTCCCTGTATCTCTCAGCAAAGGACGACAATCATATCCCACATCTGAAGCAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000038371-'52-45,'52-44,55-45
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.088
Domain overlap (PFAM):
C1:
PF123353=SBF2=FE(21.8=100)
A:
PF123353=SBF2=FE(9.8=100)
C2:
PF123353=SBF2=FE(24.9=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGCAAGACAGTGTCTCACT
R:
AATGGGGTGGTCCTGTACACA
Band lengths:
171-240
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types