GgaEX1050920 @ galGal4
Exon Skipping
Gene
ENSGALG00000005716 | SBF2
Description
SET binding factor 2 [Source:HGNC Symbol;Acc:HGNC:2135]
Coordinates
chr5:8573958-8608842:+
Coord C1 exon
chr5:8573958-8574107
Coord A exon
chr5:8595903-8595971
Coord C2 exon
chr5:8608672-8608842
Length
69 bp
Sequences
Splice sites
3' ss Seq
TTCATATGTTTCTCTTGAAGGAT
3' ss Score
9.59
5' ss Seq
AGGGTAAGT
5' ss Score
10.45
Exon sequences
Seq C1 exon
ACCTTGCCTGCAGCTCTGAGAGCCCTAAAAGGAAAGGCAGCCCGACACTGCCTGACACAGGAATTAGGCCTGCATGTTAAACAAAATCGAGCGATACTGGACCATCAGCAGTTTGACTACATAGTACGAATGATGAACTGTGCTTTGCAG
Seq A exon
GATTGCTCGTCATCAGAAGAATATAGTGTTGCTGCAGCCTTGCTACCCCTGACAACTGCTTTCTATAGG
Seq C2 exon
AAATTAGCACCTGGAGTTAGTCAGTTTGCTTACACATGTGTACAGGACCATCCAATCTGGACTAACCAGCAGTTTTGGGAAACCACCTTTTATAGCAACGTGCAAAATCAAGTTCGTTCCCTCTACCTTACAGCCAAAGAAGACAACCATGCAGTACATCCAAGACAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005716-'28-34,'28-32,30-34
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.158
Domain overlap (PFAM):
C1:
PF123353=SBF2=FE(21.6=100)
A:
PF123353=SBF2=FE(9.7=100)
C2:
PF123353=SBF2=FE(24.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCGATACTGGACCATCAGCAG
R:
CGAACTTGATTTTGCACGTTGC
Band lengths:
176-245
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]