HsaEX0056301 @ hg19
Exon Skipping
Gene
ENSG00000133812 | SBF2
Description
SET binding factor 2 [Source:HGNC Symbol;Acc:2135]
Coordinates
chr11:9879773-9983653:-
Coord C1 exon
chr11:9983504-9983653
Coord A exon
chr11:9917490-9917558
Coord C2 exon
chr11:9879773-9879943
Length
69 bp
Sequences
Splice sites
3' ss Seq
TGTCTTTGTTTTGCTTAAAGGAT
3' ss Score
7.81
5' ss Seq
AGGGTAAGT
5' ss Score
10.45
Exon sequences
Seq C1 exon
ACCCTTCCTGCTGCACTCAGAGCCCTTAAAGGAAAGGCAGCAAGACAGTGTCTCACTGATGAATTGGGTTTGCATGTCCAGCAAAACCGGGCAATATTAGACCATCAACAGTTTGACTACATAATAAGGATGATGAATTGTACTCTACAG
Seq A exon
GATTGTTCAAGTTTAGAAGAATACAACATTGCCGCAGCATTACTCCCTTTGACCAGTGCTTTCTATAGG
Seq C2 exon
AAACTTGCCCCTGGAGTCAGCCAGTTTGCTTACACGTGTGTACAAGACCACCCCATTTGGACAAATCAGCAATTTTGGGAGACAACCTTTTACAATGCAGTGCAGGAACAGGTTCGCTCCCTTTATCTCTCAGCCAAGGAAGACAATCATGCCCCGCATCTGAAGCAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000133812-'18-24,'18-21,22-24
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.105
Domain overlap (PFAM):
C1:
PF123353=SBF2=FE(21.6=100)
A:
PF123353=SBF2=FE(10.1=100)
C2:
PF123353=SBF2=FE(24.7=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAAAGGCAGCAAGACAGTGT
R:
GGGTGGTCTTGTACACACGTG
Band lengths:
173-242
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)