BtaEX6063993 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000015910 | ITGB1
Description
Bos taurus integrin, beta 1 (fibronectin receptor, beta polypeptide, antigen CD29 includes MDF2, MSK12) (ITGB1), mRNA. [Source:RefSeq mRNA;Acc:NM_174368]
Coordinates
chr13:20267903-20273376:+
Coord C1 exon
chr13:20267903-20267988
Coord A exon
chr13:20271509-20271731
Coord C2 exon
chr13:20273206-20273376
Length
223 bp
Sequences
Splice sites
3' ss Seq
ATATTTTATATGTCATTTAGACA
3' ss Score
4.6
5' ss Seq
CAGGTATGG
5' ss Score
9.99
Exon sequences
Seq C1 exon
ATGAAAACAGATGTTTGAAAGCAAATGCCAAATCATGTGGGGAGTGTATACAAGCAGGGCCAAATTGTGGATGGTGCACAAATTCA
Seq A exon
ACATTTTTACAAGAAGGTATGCCTACATCTGCTCGATGTGATGATTTAGAAGCCTTAAAAAAGAAGGGCTGTCATCCAAATGACATTGAAAATCCTAGAGGCTCCAAAGATATAAAGAAAAATAAAAATGTAACGAATCGAAGCAAAGGAACAGCAGAGAAGCTGCAGCCAGAAGATATCACTCAAATCCAGCCACAGCAGTTGGTTCTGCAGTTACGATCAG
Seq C2 exon
GGGAGCCACAGACATTCACACTAAAATTCAAGCGGGCTGAAGACTATCCCATTGATCTCTACTACCTCATGGACCTCTCCTATTCCATGAAAGACGACTTGGAGAATGTGAAAAGTCTGGGAACAGATTTGATGAATGAAATGAGGAGGATCACTTCAGACTTCCGAATTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000015910-'20-11,'20-8,22-11=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.507 C2=0.000
Domain overlap (PFAM):
C1:
PF0036213=Integrin_beta=PU(3.9=58.6)
A:
PF0036213=Integrin_beta=FE(17.2=100)
C2:
PF0036213=Integrin_beta=FE(13.2=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAACAGATGTTTGAAAGCAAATGCC
R:
AATTCGGAAGTCTGAAGTGATCCT
Band lengths:
252-475
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]