GgaEX6018543 @ galGal4
Exon Skipping
Gene
ENSGALG00000007145 | ITGB1
Description
integrin beta-1 precursor [Source:RefSeq peptide;Acc:NP_001034343]
Coordinates
chr2:13993497-13997284:+
Coord C1 exon
chr2:13993497-13993582
Coord A exon
chr2:13994969-13995191
Coord C2 exon
chr2:13997114-13997284
Length
223 bp
Sequences
Splice sites
3' ss Seq
TATTTGTCCATATTTTCTAGGAC
3' ss Score
9.84
5' ss Seq
TCGGTAAGG
5' ss Score
10.48
Exon sequences
Seq C1 exon
GTGGAAGTGACTGCATAAAAGCCAACGCAAAATCATGTGGGGAATGTATACAGGCAGGACCAAACTGTGGTTGGTGTAAAAAAACA
Seq A exon
GACTTTCTGCAAGAAGGAGAACCAACATCTGCCCGATGCGATGACTTGGCAGCGCTGAAGAGTAAAGGCTGTCCTGAGCAAGATATAGAAAATCCCAGAGGTAGCAAACGTGTGCTTGAAGATAGAGAAGTAACAAATCGTAAGATAGGTGCTGCAGAGAAGCTGAAACCAGAGGCCATTACACAGATCCAGCCACAAAAATTAGTACTGCAACTAAGAGTCG
Seq C2 exon
GGGAACCGCAAACATTTTCATTAAAATTTAAGAGAGCTGAAGATTACCCCATTGACCTTTATTATCTTATGGACCTCTCCTATTCTATGAAAGATGATTTAGAGAATGTGAAAAGCCTTGGCACAGCTCTGATGCGTGAAATGGAAAAAATAACCTCAGATTTTCGAATTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007145-'6-7,'6-6,8-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.156 C2=0.000
Domain overlap (PFAM):
C1:
PF0036213=Integrin_beta=PU(3.9=58.6)
A:
PF0036213=Integrin_beta=FE(17.1=100)
C2:
PF0036213=Integrin_beta=FE(13.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGAAGTGACTGCATAAAAGCCA
R:
TCCATTTCACGCATCAGAGCT
Band lengths:
230-453
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]