DreEX6093674 @ danRer10
Exon Skipping
Gene
ENSDARG00000071863 | itgb1a
Description
integrin, beta 1a [Source:ZFIN;Acc:ZDB-GENE-060803-2]
Coordinates
chr24:1133394-1135444:-
Coord C1 exon
chr24:1135359-1135444
Coord A exon
chr24:1133744-1133963
Coord C2 exon
chr24:1133394-1133564
Length
220 bp
Sequences
Splice sites
3' ss Seq
TTAATATTTACTCCCGACAGGAG
3' ss Score
8.07
5' ss Seq
CCGGTGCGT
5' ss Score
9.74
Exon sequences
Seq C1 exon
AGGGCAACGAGTGCATTAAAGCCAACGCTTTGTCCTGCGGCGAGTGCATACAAGTGGGGGACAAATGTGGATGGTGCACTGATGCG
Seq A exon
GAGTTTCTGAAGCAGGGAGAGCCGACATCGGCGCGCTGTGATGAGCTGGAGTCGCTCAAGAAAAGAGGCTGCGCAGAAGATAAGATCGAGAACCCGCACGGCAGCCAGAGAATCCTGAAGAATACACCGGTGACCAACCGCAAGAAAGGAGCCGAGAAACTCCGACCCGAGGACATCACGCAGATCCAGCCTCAGAAACTCAGCCTCCAGCTCAGATCCG
Seq C2 exon
GAGAACCTCAGAATATTAAACTGAAGTTCAAGCGGGCTGAGGACTATCCCATAGACCTGTACTACCTGATGGACCTGTCCTACTCCATGAAGGACGACCTGGAGAACGTTAAAAACCTGGGGACGAGTCTGATGAAGGAGATGTCCAAGATCACCTCAGACTTCAGGATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000071863-'4-5,'4-4,5-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.392 C2=0.000
Domain overlap (PFAM):
C1:
PF0036213=Integrin_beta=PU(3.9=58.6)
A:
PF0036213=Integrin_beta=FE(16.9=100)
C2:
PF0036213=Integrin_beta=FE(13.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACGAGTGCATTAAAGCCAACG
R:
CTATCCTGAAGTCTGAGGTGATCT
Band lengths:
252-472
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]