RnoEX0045182 @ rn6
Exon Skipping
Gene
ENSRNOG00000010966 | Itgb1
Description
integrin subunit beta 1 [Source:RGD Symbol;Acc:2927]
Coordinates
chr19:61698692-61705374:+
Coord C1 exon
chr19:61698692-61698777
Coord A exon
chr19:61702233-61702455
Coord C2 exon
chr19:61705204-61705374
Length
223 bp
Sequences
Splice sites
3' ss Seq
GTATTTTATATTTCATTTAGACA
3' ss Score
5.71
5' ss Seq
CAGGTACCT
5' ss Score
8.16
Exon sequences
Seq C1 exon
ATAAAAATAGATGTTTAAAAGCAAATGCCAAATCTTGTGGAGAATGTATACAAGCAGGGCCAAATTGTGGGTGGTGTACAAATACG
Seq A exon
ACATTTTTACAAGAAGGAATGCCTACTTCTGCACGATGTGATGATTTAGAAGCTTTGAAAAAGAAGGGTTGCCAACCAAGTGACATAGAGAATCCCAGAGGCTCCCAAACTATAAAGAAGAATAAAAACGTCACCAATCGCAGCAAAGGGATGGCAGAGAAGCTCCGGCCAGAAGACATTACTCAGATCCAACCACAACAGCTGCTTCTAAAGTTGCGATCAG
Seq C2 exon
GAGAACCACAGAAGTTTACATTAAAATTCAAGAGGGCTGAAGACTACCCTATTGATCTGTACTACCTTATGGATCTCTCCTACTCTATGAAAGATGATCTGGAGAATGTGAAGAGTCTTGGGACGGATCTGATGAATGAAATGAGGAGGATTACTTCAGACTTCCGCATTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000010966-'6-6,'6-4,7-6
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.440 C2=0.000
Domain overlap (PFAM):
C1:
PF0036213=Integrin_beta=PU(3.9=58.6)
A:
PF0036213=Integrin_beta=FE(17.2=100)
C2:
PF0036213=Integrin_beta=FE(13.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAATAGATGTTTAAAAGCAAATGCCA
R:
AATGCGGAAGTCTGAAGTAATCCT
Band lengths:
252-475
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]