BtaEX6064421 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000001552 | EPC1
Description
enhancer of polycomb homolog 1 (Drosophila) [Source:HGNC Symbol;Acc:HGNC:19876]
Coordinates
chr13:33516078-33518736:+
Coord C1 exon
chr13:33516078-33516219
Coord A exon
chr13:33516327-33516690
Coord C2 exon
chr13:33518664-33518736
Length
364 bp
Sequences
Splice sites
3' ss Seq
GCGTCTTTCCTTTTCCCTAGGAG
3' ss Score
11.7
5' ss Seq
ACGGTGAGT
5' ss Score
11.45
Exon sequences
Seq C1 exon
GGTTTTGTGTCCAAGACTTTGGATTCTGCTAGTGCTCAATTTGCTGCTTCTGCTTTGGTGACATCGGAACAACTGATGGGATTCAAGATGAAGGAGGATGTGGTGCTTGGAATTGGGGTGAACGGCGTCCTTCCAGCCTCAG
Seq A exon
GAGTATACAAGGGCTTACACCTCAGTAGTACTACACCCACAGCACTTGTCCACACGAGTCCGTCGACGGCAGGGCCGGCTTTGCTGCAGCCTGCAAGCGTGACCCAGACTGCGGGTTCCCACAGTGCGCCGGGTCACCCGGCGACCGCTGCCAACTCCGCCACAACTCAGGTTCTGATTGGGAACAACATTCGATTGACTGTACCTTCATCAGTTGCCACTGTAAACTCTATCACCCCCATAAATGCACGACACATACCTAGGACTTTAAGTGCTGTCCCATCGTCTGCCTTAAAGCTGGCTGCTGCAGCGAACTGTCAAGTTTCCAAGGTCCCGTCGTCGTCCTCCGTGGATGCCGCTCCACG
Seq C2 exon
GGAAAATCACGACTCAGAAAAGCCAGCACTAAACAACATAGCAGACAACACAGTGGCGATGGAGGTGACGTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000001552-'18-18,'18-17,19-18=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.459 C2=0.875
Domain overlap (PFAM):
C1:
PF067527=E_Pc_C=FE(18.0=100)
A:
PF067527=E_Pc_C=FE(46.4=100)
C2:
PF067527=E_Pc_C=PD(8.8=92.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTTTGGATTCTGCTAGTGCTCA
R:
CTACGTCACCTCCATCGCCA
Band lengths:
200-564
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]