DreEX6070681 @ danRer10
Exon Skipping
Gene
ENSDARG00000101579 | epc1a
Description
enhancer of polycomb homolog 1 (Drosophila) a [Source:ZFIN;Acc:ZDB-GENE-070629-5]
Coordinates
chr12:40972159-40975885:+
Coord C1 exon
chr12:40972159-40972297
Coord A exon
chr12:40972400-40972736
Coord C2 exon
chr12:40974293-40975885
Length
337 bp
Sequences
Splice sites
3' ss Seq
AATTTCTGTCTCTTCAACAGGAG
3' ss Score
9.47
5' ss Seq
TGGGTAACC
5' ss Score
3.95
Exon sequences
Seq C1 exon
TCTCTCGTGTCTAAGACGCTGGACTCTGTCAGCGCTCAGTTTGCGGCCTCTGCACTCATGACCTCTGACCAGCTACTGACCCTGAAGGTCAAAGAGGACGGCGCAGGAGGTGGAGTTAACGGAGTCATTCAGGCTTCAG
Seq A exon
GAGTTTACAAGGGATTGAGCATCTCCTCCACTTCCTCCTCTGCGCTCATCACTAGCCAATCAGCACCGACCGCTGCCCCGCCCACCTTCCTCTCCTCCTCTAGCAACTCCAACACAAGCTCCACCCACTCAGTTCACACCCCTATTGGTAACCATGGCAACAGCACAGCTAACTCCGCCTCTCAGGTCCTGATCGGCAACAACCTTCGTCTCAGCGTCACTGCGCCATCCATCGCCAGTCTGAACGCCCGACACCTTCCCAGAAGCCTCAGCAACGTGCCACCTGCTGCCTTGAAGCTTGCCGCAAGCAACTGTCAGCTTCCCAAAGCCAACGCTGG
Seq C2 exon
GGAGAAGCACGAGCAGGAGAAGCAGTCGCTCAACAGTCTAGCAGAAAACACAGTGGCCATGGAGGTGACGTAGTGACCGTTTCCAGTCCAGTCTTTTGGTGCTGTGCATCAGTTAAGTTTGGGAAAGCAAAAGGACGGAGGGTTTCCACTTCAACTGTCTGAACATGACTAAAAATTCATCTCTTCCTTTATTTTCGGCCCCCCTTTTTTCTTTTTTTAACTATACGTTGTTTCTGTTAAGAGAAAAGTGATGTGTTGATTAAGAATGTGGCTAATATTCGATGTACAGAAACTACATATTTGTAAAAGCCCACCCCCACCACCCTTGTATATACGCTACTTGAATACAGAACTGTTGAGTTTGTGATGTTTTGCACTTGGGGAATCAAAAAGAGATTGTGAATGAGGGGAAGAAGTGTGTGTGAGTGTGAAACCGTGAGGTCAGGTATAAAAGTGAGTGTGTGAATAGTCATGTGCATGGTGAGGAAACCTGCTGTTCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000101579-'16-16,'16-14,17-16=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.128 A=0.465 C2=0.811
Domain overlap (PFAM):
C1:
PF067527=E_Pc_C=FE(21.1=100)
A:
PF067527=E_Pc_C=FE(51.4=100)
C2:
PF067527=E_Pc_C=PD(10.6=92.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGGAGGTGGAGTTAACGGA
R:
GTGGGGGTGGGCTTTTACAAA
Band lengths:
357-694
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]