RnoEX6053805 @ rn6
Exon Skipping
Gene
ENSRNOG00000014834 | Epc1
Description
enhancer of polycomb homolog 1 [Source:RGD Symbol;Acc:2324280]
Coordinates
chr17:57304933-57308320:-
Coord C1 exon
chr17:57308179-57308320
Coord A exon
chr17:57307714-57308077
Coord C2 exon
chr17:57304933-57305304
Length
364 bp
Sequences
Splice sites
3' ss Seq
TGCTTTCTTCCTCTCCCTAGGAG
3' ss Score
12.33
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
Exon sequences
Seq C1 exon
GGTTTTGTTTCTAAGACGTTGGATTCTGCCAGTGCACAGTTCGCTGCTTCTGCTTTAATGACGTCAGAACAGCTGATGGGATTCAAGATGAAGGATGATGTGGTGCTTGGGATTGGGGTGAATGGCGTCCTTCCCGCCTCAG
Seq A exon
GAGTATACAAGGGCTTGCACCTCAGCAGCACTACACCAACGGCGCTTGTACATACGAGTCCTTCGACCGCAGGTTCAACCTTGTTACAGCCTTCAAATATTACACAGACTTCGGGTTCCCACAGCGCACTGAGTCACCAAGTAACTGCTGCCAACTCTGCAACAACTCAGGTTCTGTTTGGGAACAACATCCGATTAACTGTCCCCTCATCTGTCCCCACTGTCAACTCTATCGCCCCAATAAACGCACGGCATATACCTAGGACTTTAAGTGCTGTTCCGCCATCTGCCTTAAAGCTGGCTGCTGCAGCAAACTGTCAAGTTTCCAAGGTCCCCTCCTCATCCTCTGTAGATTCAGTTCCAAG
Seq C2 exon
GGAAAATCATGAATCAGAAAAGCCAGCACTGAACAACATAGCAGACAACACAGTAGCAATGGAGGTGACGTAGCTTCCTGGGAGCAGGACTGCATCCTGGGGACATGGTCAGGTGCTATGCATCAGAGCGTTGGAACGCAGGGAGGATGGAGTGCGTAGGCGGTTCCGTGGCAGCTGTGGGGACTCGGCAGCACTGCGCACCTCTCGTGCTTCAACCTTTCTTTTCTTATTGTTAATAGGAAAAAATCAACATCTGTAAATTAAGAATACAGCAATTATCTGTACAGTACTGCATATTTGTAATACCCTTGTATATATGTTACTTGAATACAGAACTGTTCATTTGTGATGCTTTGCACTTGGGGGCGGGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000014834-'24-22,'24-21,26-22=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.062 A=0.418 C2=0.833
Domain overlap (PFAM):
C1:
PF067527=E_Pc_C=FE(20.3=100)
A:
PF067527=E_Pc_C=FE(52.2=100)
C2:
PF067527=E_Pc_C=PD(9.9=92.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGGATTCTGCCAGTGCACAG
R:
AAAGGTTGAAGCACGAGAGGT
Band lengths:
344-708
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]