MmuEX6000090 @ mm10
Exon Skipping
Gene
ENSMUSG00000024240 | Epc1
Description
enhancer of polycomb homolog 1 (Drosophila) [Source:MGI Symbol;Acc:MGI:1278322]
Coordinates
chr18:6435951-6440190:-
Coord C1 exon
chr18:6440049-6440190
Coord A exon
chr18:6439786-6439955
Coord C2 exon
chr18:6435951-6437307
Length
170 bp
Sequences
Splice sites
3' ss Seq
CGCTTTCTTTTTCTCCCTAGGAG
3' ss Score
12.31
5' ss Seq
CAGGTTCTG
5' ss Score
2.14
Exon sequences
Seq C1 exon
GGTTTTGTTTCTAAGACGTTGGACTCTGCTAGTGCACAGTTTGCTGCTTCTGCTTTGATGACGTCGGAACAGCTGCTGGGGTTCAAGGTGAAGGATGATGTGGTGCTCGGGCTCGGGGTGAATGGCGTCCTTCCTGCCTCAG
Seq A exon
GAGTATACAAGGGCTTACACCTCAGTAGCACTACACCAACGGCACTTGTACATACGAGTCCTTCGACAGCAGGTTCAACTTTGTTACAGCCTTCAAATATTACACAGACTTCGGGTTCCCACAGCTCACTGAGTCACCAAGTAACTGCTGCCAGCTCTGCAACAACTCAG
Seq C2 exon
GGAAAATCATGAATCGGAAAAGCCAGCACTGAACAACATAGCAGACAACACAGTAGCAATGGAGGTGACGTAGCTTCCTGGGAGCAGGACTGCATCCTGGGGACATGGTCAGGTGCTATGCATCAGAGCGTTGGAACGCAGGGAGTATGGAGAGCACTTGTGCGGTTCCGTGGCAGCTGTGGGGACTCGGCAGCACTGCGCAGCTCTCGAATCTCTCGTGCTTCAACCTTTCTTTTCTTATTGTTAATAGGAAAAAATCAACATCTGTAAATTAAGAATACAGCAATTATCTGTACAGTACTGCATATTTGTAATACCCTTGTATATATGTTACTTGAATACAGAACTGTTCATTTGTGATGCTTTGCACTTGGGGGCGGGGGGTGGGGGGTAACTGCAACAAGAGTGTGAGCTGTGAGATTGTGTAGCTGGTGTCATCACATCATGTGCATGGTGCGGAACCTGCTGTCTCTATTTATTGTGCCGTGTTTACAGGTTTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000024240-'29-29,'29-28,30-29
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.010 A=0.468 C2=0.875
Domain overlap (PFAM):
C1:
PF067527=E_Pc_C=FE(20.2=100)
A:
PF067527=E_Pc_C=PD(62.2=98.4)
C2:
PF067527=E_Pc_C=PD(9.9=92.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACGTTGGACTCTGCTAGTGC
R:
GCATAGCACCTGACCATGTCC
Band lengths:
249-419
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types