GgaEX6018545 @ galGal3
Exon Skipping
Gene
ENSGALG00000007169 | EPC1
Description
NA
Coordinates
chr2:14082294-14083524:+
Coord C1 exon
chr2:14082294-14082435
Coord A exon
chr2:14082581-14082947
Coord C2 exon
chr2:14083219-14083524
Length
367 bp
Sequences
Splice sites
3' ss Seq
GCTTTGTTTCTCTTTGGCAGGAG
3' ss Score
8.4
5' ss Seq
GAGGTAGGC
5' ss Score
8.99
Exon sequences
Seq C1 exon
GGTTTTGTTTCCAAGACACTGGATTCTGTTAGTGCTCAATTCGCTGCTTCAGCTTTGGTTACATCAGAACAATTGATGGGATTCAAAATGAAGGATGATGTGGTGCTTGGAATTGGGGTGAATGGCATTCTTCAAGCCTCAG
Seq A exon
GAGTATACAAGGGCTTACACCTCAGTAGTACTACACCTACAGCACTTGTCCATACAAGTTCATCATCAGCAGCGGGTTCAGCCTTGCTACAGCCTTCAAATATAACGCAGACTTCAAGTTCCCACAGTGCACTGAGTCACCAAGCATCTGCTGCCAATTCTGCAACAACTCAGGTTCTGATTGGGAACAACATCCGATTAACTGTACCCTCATCAGTTGCCACTGTAAACTCTATCACCACGCTCAATGCACGACATATACCTAGGACTTTAAGTGCTGTTCCATCATCTGCCTTAAAGCTGGCTGCAGCGACGAACTGTCAGGTGCCCAAGGTTCCAGCTTCATCCTCTGTGGATGCAGTACCGAG
Seq C2 exon
GGAAAACCATGAAACAGAGAAGCCAGCACTGAACAATATAGCGGACAATACAGTAGCAATGGAGGTGACGTAGTTTCCGTAGGAGTGGAACTGCAGCCTTGGGAACTTGTTTAGGTGCTATGCATCAGTAGCATTTTGAATGCAAGGGATGATGGAATGCCGCACATTGCGTTTCCATGGCAGCTGTGGGGACTTGACAGCAATGCACATCTCTCATGCTTTGGTTTTTCTTTTCTTACTGTTAATAGGAAAGAATCGACATCTGTAAATTAACAATACAGCAATTATCTGTACAGTACTGCATAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007169-'15-23,'15-22,16-23=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.021 A=0.285 C2=0.833
Domain overlap (PFAM):
C1:
PF067527=E_Pc_C=FE(20.2=100),PF073636=DUF1484=PD(55.0=91.7)
A:
PF067527=E_Pc_C=FE(52.4=100)
C2:
PF067527=E_Pc_C=PD(9.9=92.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGTTAGTGCTCAATTCGCTGC
R:
ACCAAAGCATGAGAGATGTGCA
Band lengths:
342-709
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]