HsaEX6088086 @ hg38
Exon Skipping
Gene
ENSG00000120616 | EPC1
Description
enhancer of polycomb homolog 1 [Source:HGNC Symbol;Acc:HGNC:19876]
Coordinates
chr10:32267751-32272167:-
Coord C1 exon
chr10:32272026-32272167
Coord A exon
chr10:32271554-32271917
Coord C2 exon
chr10:32267751-32269135
Length
364 bp
Sequences
Splice sites
3' ss Seq
TTCTTTCTTTTTCTCTCTAGGAG
3' ss Score
12.57
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
Exon sequences
Seq C1 exon
GGTTTTGTTTCTAAGACTTTGGATTCTGCTAGTGCACAGTTTGCTGCTTCTGCTTTGGTGACATCAGAACAACTGATGGGATTCAAGATGAAGGATGATGTGGTGCTTGGAATCGGGGTGAATGGCGTCCTTCCAGCCTCAG
Seq A exon
GAGTATACAAGGGCTTACACCTCAGTAGTACTACACCAACAGCACTTGTACATACAAGTCCATCAACGGCAGGTTCAGCTTTGTTACAGCCTTCAAATATTACACAGACTTCAAGTTCCCACAGTGCACTGAGTCATCAAGTAACTGCTGCCAATTCTGCAACAACTCAGGTTCTGATTGGGAACAACATTCGATTAACTGTACCTTCATCAGTTGCCACTGTAAACTCTATTGCCCCAATAAATGCACGACATATACCTAGGACTTTAAGTGCTGTTCCATCATCTGCCTTAAAGCTGGCCGCTGCAGCAAACTGTCAAGTTTCCAAGGTCCCATCTTCATCCTCTGTAGATTCAGTTCCAAG
Seq C2 exon
GGAAAATCATGAATCAGAAAAGCCAGCACTGAACAACATAGCAGACAACACAGTAGCGATGGAGGTGACGTAGCTTCCTCCGAGTGGAACTGCAGCCTGGGGACTTGATTAGGTGCTATGCATCAGTAGCATTTTGAATGCAAGGGATGATGGAAAGCAGCACATGCGTTTCTGTGGCAGCTGTGGGGACTTGACAGCAATGCTCATCTCTCATGCTTCAATTTTTCTTTTCTTACTGTTAATAGGAAAAAAATCAACATCTGTAAATTAAGAATACAGCAATTATCTGTACAGTACTGCATATTTGTAATACCCTTGTATATATGTTACTTGAATACAGAAATGTTCATTTGTGATGCTTTGCACTTGGGGGTGGGGGGTGGGAGGGAAATCAATTGCAACAAAGAGTGTGAGATGTGAGATTGTATAGAGATGAAGTGTCATCACATCATGTGCATGGTGCGGAACCTGCTGTTTTATCTATTTATTGTGCCGTGTTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000120616-'40-42,'40-40,42-42
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.042 A=0.333 C2=0.792
Domain overlap (PFAM):
C1:
PF067527=E_Pc_C=FE(18.4=100)
A:
PF067527=E_Pc_C=FE(47.5=100)
C2:
PF067527=E_Pc_C=PD(9.9=92.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGATTCTGCTAGTGCACAGT
R:
GAAGCATGAGAGATGAGCATTGC
Band lengths:
342-706
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains