MmuEX6000090 @ mm9
Exon Skipping
Gene
ENSMUSG00000024240 | Epc1
Description
enhancer of polycomb homolog 1 (Drosophila) [Source:MGI Symbol;Acc:MGI:1278322]
Coordinates
chr18:6435949-6440188:-
Coord C1 exon
chr18:6440047-6440188
Coord A exon
chr18:6439590-6439953
Coord C2 exon
chr18:6435949-6437305
Length
364 bp
Sequences
Splice sites
3' ss Seq
CGCTTTCTTTTTCTCCCTAGGAG
3' ss Score
12.31
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
Exon sequences
Seq C1 exon
GGTTTTGTTTCTAAGACGTTGGACTCTGCTAGTGCACAGTTTGCTGCTTCTGCTTTGATGACGTCGGAACAGCTGCTGGGGTTCAAGGTGAAGGATGATGTGGTGCTCGGGCTCGGGGTGAATGGCGTCCTTCCTGCCTCAG
Seq A exon
GAGTATACAAGGGCTTACACCTCAGTAGCACTACACCAACGGCACTTGTACATACGAGTCCTTCGACAGCAGGTTCAACTTTGTTACAGCCTTCAAATATTACACAGACTTCGGGTTCCCACAGCTCACTGAGTCACCAAGTAACTGCTGCCAGCTCTGCAACAACTCAGGTTCTGTTTGGGAACAACATCCGATTAACTGTCCCCTCATCTGTCCCCACTGTCAACTCTGTCACCCCAATAAACGCACGGCATATACCTAGGACTTTAAGTGCTGTTCCGCCATCTGCCTTAAAGCTGGCTGCTGCAGCAAATTGTCAAGTTTCCAAGGTCCCCTCCTCATCCTCTGTAGATTCAGTTCCAAG
Seq C2 exon
GGAAAATCATGAATCGGAAAAGCCAGCACTGAACAACATAGCAGACAACACAGTAGCAATGGAGGTGACGTAGCTTCCTGGGAGCAGGACTGCATCCTGGGGACATGGTCAGGTGCTATGCATCAGAGCGTTGGAACGCAGGGAGTATGGAGAGCACTTGTGCGGTTCCGTGGCAGCTGTGGGGACTCGGCAGCACTGCGCAGCTCTCGAATCTCTCGTGCTTCAACCTTTCTTTTCTTATTGTTAATAGGAAAAAATCAACATCTGTAAATTAAGAATACAGCAATTATCTGTACAGTACTGCATATTTGTAATACCCTTGTATATATGTTACTTGAATACAGAACTGTTCATTTGTGATGCTTTGCACTTGGGGGCGGGGGGTGGGGGGTAACTGCAACAAGAGTGTGAGCTGTGAGATTGTGTAGCTGGTGTCATCACATCATGTGCATGGTGCGGAACCTGCTGTCTCTATTTATTGTGCCGTGTTTACAGGTTTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000024240-'18-19,'18-18,20-19=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.014 A=0.463 C2=0.875
Domain overlap (PFAM):
C1:
PF067527=E_Pc_C=FE(24.4=100),PF0015622=Pribosyltran=PU(41.6=87.5)
A:
PF067527=E_Pc_C=PD(62.2=98.4),PF0015622=Pribosyltran=PD(57.4=47.5)
C2:
PF067527=E_Pc_C=PD(9.9=92.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACGTTGGACTCTGCTAGTGC
R:
GAGAGATTCGAGAGCTGCGC
Band lengths:
345-709
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: