BtaEX6064935 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000006531 | DIP2C
Description
DIP2 disco-interacting protein 2 homolog C (Drosophila) [Source:HGNC Symbol;Acc:HGNC:29150]
Coordinates
chr13:47112324-47126076:+
Coord C1 exon
chr13:47112324-47112438
Coord A exon
chr13:47125293-47125432
Coord C2 exon
chr13:47125940-47126076
Length
140 bp
Sequences
Splice sites
3' ss Seq
GACTCAACCTGTCCTCATAGGCC
3' ss Score
7.84
5' ss Seq
GAGGTGAGG
5' ss Score
8.41
Exon sequences
Seq C1 exon
GGTCTATTTCTTCCTGTGATGCATTTCTCAACGTCTTCCAAAGTAAAGGTCTACGCCAGGAGGTCATCTGCCCCTGCGCCAGCTCACCAGAGGCTCTCACTGTGGCCATCCGGAG
Seq A exon
GCCCACCGATGACAGCAACCAGCCCCCGGGCCGTGGCGTCCTCTCCATGCATGGGCTGACCTATGGGGTCATCCGAGTGGACTCAGAGGAAAAGCTGTCTGTACTCACCGTGCAAGATGTCGGCCTCGTGATGCCTGGAG
Seq C2 exon
CCATCATGTGTTCAGTGAAGCCTGATGGGGTTCCCCAGCTGTGCAGGACAGACGAAGTCGGGGAGCTCTGCGTGTGCGCGGTGGCCACGGGCATGTCCTACTATGGCCTCTCGGGTATGACCAAGAACACCTTCGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000006531-'20-24,'20-23,22-24=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.077 A=0.229 C2=0.000
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=FE(8.0=100)
A:
PF0050123=AMP-binding=FE(9.9=100)
C2:
PF0050123=AMP-binding=FE(9.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTCTATTTCTTCCTGTGATGCA
R:
AGGTGTTCTTGGTCATACCCGA
Band lengths:
247-387
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]