RnoEX0027968 @ rn6
Exon Skipping
Gene
ENSRNOG00000015288 | Dip2c
Description
disco-interacting protein 2 homolog C [Source:RGD Symbol;Acc:1560155]
Coordinates
chr17:63716672-63744680:+
Coord C1 exon
chr17:63716672-63716786
Coord A exon
chr17:63739986-63740125
Coord C2 exon
chr17:63744544-63744680
Length
140 bp
Sequences
Splice sites
3' ss Seq
AGCTAAAACTACCCTTTTAGGCC
3' ss Score
4.7
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
Exon sequences
Seq C1 exon
GGTCTATTTCTTCTTGTGATGCGTTTCTCAATGTCTTCCAGAGTAAAGGCCTTCGACAGGAGGTCATCTGTCCCTGTGCCAGCTCACCAGAGGCCCTCACTGTGGCAATCCGGAG
Seq A exon
GCCTACAGATGACAGCAACCAGCCACCAGGGCGAGGTGTGCTATCCATGCATGGGCTGACCTATGGTGTGATCCGTGTGGATTCCGAGGAGAAGCTGTCCGTGCTCACCGTGCAGGATGTCGGCCTTGTCATGCCTGGAG
Seq C2 exon
CCATCATGTGTTCAGTGAAGCCGGATGGGGTGCCTCAGCTGTGCAGGACGGATGAAATTGGGGAGCTCTGTGTCTGTGCAGTTGCCACAGGAACGTCATATTATGGTCTCTCGGGCATGACCAAGAACACCTTTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000015288-'32-30,'32-29,35-30
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.077 A=0.229 C2=0.000
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=FE(8.0=100)
A:
PF0050123=AMP-binding=FE(9.9=100)
C2:
PF0050123=AMP-binding=FE(9.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTCTATTTCTTCTTGTGATGCGT
R:
GTTCTTGGTCATGCCCGAGAG
Band lengths:
243-383
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]