HsaEX6087272 @ hg38
Exon Skipping
Gene
ENSG00000151240 | DIP2C
Description
disco interacting protein 2 homolog C [Source:HGNC Symbol;Acc:HGNC:29150]
Coordinates
chr10:344999-382761:-
Coord C1 exon
chr10:382647-382761
Coord A exon
chr10:369494-369633
Coord C2 exon
chr10:344999-345110
Length
140 bp
Sequences
Splice sites
3' ss Seq
GTTAAAAACTGTCATTACAGGCC
3' ss Score
3.62
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
Exon sequences
Seq C1 exon
GGTCTATTTCTTCTTGCGATGCATTTCTCAATGTCTTCCAAAGTAAAGGCCTTCGACAGGAGGTCATCTGTCCTTGTGCCAGCTCGCCAGAGGCCCTCACTGTGGCCATCCGGAG
Seq A exon
GCCCACGGATGACAGTAACCAGCCCCCGGGCCGGGGTGTCCTCTCCATGCATGGACTGACCTATGGGGTCATTCGTGTGGACTCGGAAGAGAAGCTGTCCGTGCTCACCGTGCAGGATGTCGGCCTCGTGATGCCTGGAG
Seq C2 exon
GTGAGTCGCTCTGCCTGTCTGATGACGACACAGCTGATCTGTAAGTTGCTGCGGTCCAGGGAGGCGGCGGCGGCTGTGGACGTCAGGACGTGGCCCCTCATCCTGGACACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000151240_MULTIEX3-3/12=2-C2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.077 A=0.260 C2=0.000
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=FE(16.0=100)
A:
PF0050123=AMP-binding=FE(19.3=100)
C2:
PF0050123=AMP-binding=FE(16.3=100)
Main Inclusion Isoform:
ENST00000634311fB13816
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTCTATTTCTTCTTGCGATGCA
R:
CTGTGTCCAGGATGAGGGGC
Band lengths:
227-367
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains