GgaEX1019791 @ galGal4
Exon Skipping
Gene
ENSGALG00000006652 | DIP2C
Description
disco-interacting protein 2 homolog C [Source:HGNC Symbol;Acc:HGNC:29150]
Coordinates
chr2:9964308-9970523:-
Coord C1 exon
chr2:9970409-9970523
Coord A exon
chr2:9965937-9966076
Coord C2 exon
chr2:9964308-9964444
Length
140 bp
Sequences
Splice sites
3' ss Seq
GTTATAAACCATGGTTGCAGGCC
3' ss Score
3.37
5' ss Seq
GAGGTAAGG
5' ss Score
10.28
Exon sequences
Seq C1 exon
GGTCTATTTCTTCCTGTGATGCATTTCTCAATGTCTTCCAAAGCAAAGGTCTGAGACAGGAGGTCATTTGTCCCTGCGCTAGTTCACCAGAAGCTCTCACTGTGGCTATCCGAAG
Seq A exon
GCCAACAGATGACAGCAATCAACCACCAGGCAGAGGAGTTCTGTCCATGCATGGTCTCACATATGGAGTGATTCGGGTGGACTCTGAAGAAAAGCTGTCTGTTCTGACTGTCCAGGATGTTGGCTTAGTGATGCCAGGAG
Seq C2 exon
CTATAATGTGTTCAGTAAAGCCAGATGGAATTCCTCAGCTCTGTAAAACAGATGAAATAGGAGAACTATGTGTATGTGCTATTGCAACGGGTACATCGTATTATGGACTCTCGGGCATGACCAAAAACACTTTTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006652-'18-20,'18-19,20-20
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.073 A=0.229 C2=0.000
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=PD(0.3=14.3)
A:
PF0050123=AMP-binding=FE(9.9=100)
C2:
PF0050123=AMP-binding=FE(9.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTCTATTTCTTCCTGTGATGCA
R:
AGTGTTTTTGGTCATGCCCGA
Band lengths:
246-386
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]