MmuEX6057106 @ mm10
Exon Skipping
Gene
ENSMUSG00000048264 | Dip2c
Description
disco interacting protein 2 homolog C [Source:MGI Symbol;Acc:MGI:1920179]
Coordinates
chr13:9576804-9604625:+
Coord C1 exon
chr13:9576804-9576918
Coord A exon
chr13:9601357-9601496
Coord C2 exon
chr13:9604489-9604625
Length
140 bp
Sequences
Splice sites
3' ss Seq
AGCTAAAACTACCCTTTTAGGCC
3' ss Score
4.7
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
Exon sequences
Seq C1 exon
GGTCTATTTCTTCTTGTGATGCGTTTCTCAATGTCTTCCAGAGTAAAGGCCTTCGACAGGAGGTCATCTGTCCCTGTGCCAGCTCACCAGAGGCCCTCACTGTGGCAATCCGGAG
Seq A exon
GCCCACAGATGACAGCAACCAGCCACCAGGACGAGGTGTGCTATCCATGCATGGGCTGACCTATGGTGTGATACGTGTGGATTCAGAGGAGAAGCTGTCCGTGCTCACAGTGCAGGATGTAGGCCTTGTTATGCCTGGAG
Seq C2 exon
CCATCATGTGTTCAGTGAAGCCAGATGGGATTCCTCAGTTGTGCAGGACGGATGAAATCGGGGAGCTCTGTGTCTGTGCAGTTGCCACAGGAACATCATATTATGGTCTCTCTGGCATGACCAAGAACACCTTTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000048264-'29-34,'29-30,35-34=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.032 A=0.181 C2=0.000
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=FE(7.9=100)
A:
PF0050123=AMP-binding=PD(0.8=4.2)
C2:
PF0050123=AMP-binding=FE(9.4=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTTCTTGTGATGCGTTTCTCA
R:
CAAAGGTGTTCTTGGTCATGCC
Band lengths:
242-382
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types