DreEX0027030 @ danRer10
Exon Skipping
Gene
ENSDARG00000062154 | dip2ca
Description
DIP2 disco-interacting protein 2 homolog Ca (Drosophila) [Source:ZFIN;Acc:ZDB-GENE-031118-39]
Coordinates
chr24:27094780-27099312:+
Coord C1 exon
chr24:27094780-27094846
Coord A exon
chr24:27096888-27097027
Coord C2 exon
chr24:27099176-27099312
Length
140 bp
Sequences
Splice sites
3' ss Seq
TCTGATCTTATTCAATTTAGGCC
3' ss Score
8.04
5' ss Seq
GAGGTACAC
5' ss Score
5.99
Exon sequences
Seq C1 exon
GTCTGCGGCCGGAGGTCATCTGTCCGTGTGCCAGTTCAGCTGAAGCCCTAACTGTGGCCATCAGGAG
Seq A exon
GCCCACAGATGACAGTAATCAGCCGCCGGGTCGAGGTGTGCTGTCTATGCAGGGTCTGAGCTATGGTGTCATCCGAGTGGACTCAGAGGAGCGTCTGTCTGTGCTCACCGTACAGGATGTGGGCACTGTGATGCCTGGAG
Seq C2 exon
CTCTGATGTGTGTGGTCAAACCGGAGGGAGTTCCTCAGCTGTGTCGAACAGATGAGATCGGAGAGCTGTGTGTTTGTTCCATCGCCACAGGAATGTCATATTATGGGCTCTCGGGCATGACAAAAAACACATTTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000062154-'20-25,'20-23,21-25
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.113 A=0.229 C2=0.000
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=FE(4.8=100)
A:
PF0050123=AMP-binding=FE(10.2=100)
C2:
PF0050123=AMP-binding=FE(9.4=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCATCTGTCCGTGTGCCAGTT
R:
TTTTTGTCATGCCCGAGAGCC
Band lengths:
178-318
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]