HsaEX6087272 @ hg19
Exon Skipping
Gene
ENSG00000151240 | DIP2C
Description
DIP2 disco-interacting protein 2 homolog C (Drosophila) [Source:HGNC Symbol;Acc:29150]
Coordinates
chr10:412215-428701:-
Coord C1 exon
chr10:428587-428701
Coord A exon
chr10:415434-415573
Coord C2 exon
chr10:412215-412351
Length
140 bp
Sequences
Splice sites
3' ss Seq
GTTAAAAACTGTCATTACAGGCC
3' ss Score
3.62
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
Exon sequences
Seq C1 exon
GGTCTATTTCTTCTTGCGATGCATTTCTCAATGTCTTCCAAAGTAAAGGCCTTCGACAGGAGGTCATCTGTCCTTGTGCCAGCTCGCCAGAGGCCCTCACTGTGGCCATCCGGAG
Seq A exon
GCCCACGGATGACAGTAACCAGCCCCCGGGCCGGGGTGTCCTCTCCATGCATGGACTGACCTATGGGGTCATTCGTGTGGACTCGGAAGAGAAGCTGTCCGTGCTCACCGTGCAGGATGTCGGCCTCGTGATGCCTGGAG
Seq C2 exon
CCATCATGTGTTCAGTGAAGCCAGACGGGGTTCCTCAGCTGTGCAGAACGGATGAGATCGGGGAGCTGTGTGTGTGTGCAGTTGCGACGGGCACGTCCTACTATGGCCTCTCTGGCATGACCAAGAACACCTTTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000151240-'21-24,'21-23,22-24=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.077 A=0.240 C2=0.011
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=FE(16.6=100)
A:
PF0050123=AMP-binding=FE(20.1=100),PF0022721=Proteasome=PU(28.4=44.7)
C2:
PF0050123=AMP-binding=FE(19.7=100),PF0022721=Proteasome=FE(60.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTTCTTGCGATGCATTTCTCA
R:
CAAAGGTGTTCTTGGTCATGCC
Band lengths:
242-382
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)