HsaEX6087275 @ hg38
Exon Skipping
Gene
ENSG00000151240 | DIP2C
Description
disco interacting protein 2 homolog C [Source:HGNC Symbol;Acc:HGNC:29150]
Coordinates
chr10:344999-364582:-
Coord C1 exon
chr10:364374-364582
Coord A exon
chr10:363197-363311
Coord C2 exon
chr10:344999-345110
Length
115 bp
Sequences
Splice sites
3' ss Seq
ATGCTCCTGTGTCCCCGCAGGAT
3' ss Score
13.23
5' ss Seq
CAGGTTGCC
5' ss Score
-2.52
Exon sequences
Seq C1 exon
GTGTTTCCCATGACAAGCTCCGGGGCTCCGATCAGTGAATACCCATTCATAAGGACAGGCTTGCTGGGGTTCGTGGGTCCCGGAGGCCTCGTCTTCGTGGTGGGCAAGATGGATGGCCTCATGGTGGTCAGCGGGCGCAGGCACAACGCCGACGACATCGTGGCCACTGCGCTGGCCGTAGAACCCATGAAGTTTGTCTACCGGGGAAG
Seq A exon
GATAGCCGTGTTCTCGGTGACCGTGCTGCACGACGAGAGGATCGTGATCGTGGCTGAGCAGAGGCCTGACTCCACGGAAGAGGACAGTTTCCAGTGGATGAGCCGTGTGCTGCAG
Seq C2 exon
GTGAGTCGCTCTGCCTGTCTGATGACGACACAGCTGATCTGTAAGTTGCTGCGGTCCAGGGAGGCGGCGGCGGCTGTGGACGTCAGGACGTGGCCCCTCATCCTGGACACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000151240_MULTIEX3-7/12=6-C2
Average complexity
C3*
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=PD(9.0=61.4)
A:
NO
C2:
PF0050123=AMP-binding=FE(16.3=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTTTCCCATGACAAGCTCCG
R:
GCTGTGTCGTCATCAGACAGG
Band lengths:
242-357
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains