RnoEX0027970 @ rn6
Exon Skipping
Gene
ENSRNOG00000015288 | Dip2c
Description
disco-interacting protein 2 homolog C [Source:RGD Symbol;Acc:1560155]
Coordinates
chr17:63746286-63750762:+
Coord C1 exon
chr17:63746286-63746494
Coord A exon
chr17:63748694-63748808
Coord C2 exon
chr17:63750561-63750762
Length
115 bp
Sequences
Splice sites
3' ss Seq
AGTTCCCTCTGTTCTTGCAGGAT
3' ss Score
10.4
5' ss Seq
CAGGTAGCA
5' ss Score
6.37
Exon sequences
Seq C1 exon
GTATTTCCCATGACAAGCTCTGGGGCTCCAATCAGTGAATACCCATTCATAAGGACAGGTTTGCTGGGATTTGTTGGTCCTGGGGGCCTCGTCTTTGTTGTGGGTAAGATGGACGGCCTGATGGTAGTGAGTGGACGAAGACACAATGCAGATGACATTGTGGCCACAGCCCTAGCTGTAGAGCCCATGAAGTTTGTCTACAGAGGAAG
Seq A exon
GATAGCTGTGTTCTCAGTGACTGTCCTTCATGATGAAAGGATAGTGATTGTGGCTGAGCAGAGGCCGGATTCCACAGAAGAAGACAGTTTCCAGTGGATGAGCAGAGTACTCCAG
Seq C2 exon
GCAATTGACAGTATACATCAAGTTGGAGTTTATTGCCTGGCCTTAGTCCCAGCAAATACCCTTCCCAAAACCCCACTTGGTGGCATCCATTTGTCAGAAACAAAGCAGCTTTTCCTGGAGGGCTCCCTTCACCCCTGCAATGTCCTGATGTGCCCACACACCTGTGTCACAAATTTACCGAAACCTCGGCAGAAGCAGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000015288-'37-36,'37-33,39-36
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.103
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=PD(9.0=61.4)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTGGGGCTCCAATCAGTGAA
R:
TGGGACTAAGGCCAGGCAATA
Band lengths:
242-357
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]