BtaEX6064932 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000006531 | DIP2C
Description
DIP2 disco-interacting protein 2 homolog C (Drosophila) [Source:HGNC Symbol;Acc:HGNC:29150]
Coordinates
chr13:47127231-47129267:+
Coord C1 exon
chr13:47127231-47127439
Coord A exon
chr13:47128481-47128595
Coord C2 exon
chr13:47129066-47129267
Length
115 bp
Sequences
Splice sites
3' ss Seq
TGTCCTATCTGTATCCACAGAAT
3' ss Score
10.23
5' ss Seq
CAGGTAGCT
5' ss Score
6.52
Exon sequences
Seq C1 exon
GTGTTCCCGGTGACGAGCTCAGGGGCCCCGGTCAGTGAGTACCCCTTCGTGAGGACGGGCTTGCTTGGCTTCGTTGGCCCTGGAGGGCTTGTGTTCGTGGTGGGCAAGATGGACGGGCTTATGGTGGTCAGCGGGCGCAGACACAACGCTGATGACATCGTGGCCACAGCACTGGCTGTGGAACCCATGAAGTTCGTCTACAGGGGAAG
Seq A exon
AATAGCCGTGTTTTCAGTGACTGTCCTGCACGACGAAAGGATTGTGATTGTGGCTGAGCAGAGGCCAGACTCCACGGAAGAGGACAGCTTCCAGTGGATGAGCAGGGTGCTGCAG
Seq C2 exon
GCAATCGACAGTATACATCAAGTTGGGGTTTATTGTCTGGCCTTGGTTCCAGCAAACACCCTCCCCAAAACTCCACTCGGGGGCATCCATTTGTCCGAAACAAAGCAGCTCTTCCTGGAGGGCTCACTTCACCCCTGCAATGTCCTCATGTGTCCCCACACGTGCGTTACAAACCTGCCTAAGCCTCGGCAGAAGCAACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000006531-'25-27,'25-26,27-27=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.103
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=PD(9.0=61.4)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTCAGTGAGTACCCCTTCGT
R:
GAGGGTGTTTGCTGGAACCAA
Band lengths:
243-358
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]