GgaEX6018477 @ galGal3
Exon Skipping
Gene
ENSGALG00000006652 | DIP2C
Description
NA
Coordinates
chr2:9918158-9922180:-
Coord C1 exon
chr2:9921972-9922180
Coord A exon
chr2:9921226-9921340
Coord C2 exon
chr2:9918158-9918359
Length
115 bp
Sequences
Splice sites
3' ss Seq
TCCTTCCTTGTCTCCTATAGAAT
3' ss Score
10.44
5' ss Seq
CAGGTAATG
5' ss Score
9.43
Exon sequences
Seq C1 exon
GTGTTTCCTATGACCAGTTCTGGTGGCCCTATTACTGAATATCCGTTTATAAGGACTGGACTACTAGGCTTTATAGGACCGGGTGGACTTGTCTTTGTTATTGGCAAAATGGATGGTTTGATGGTTGTCAGTGGAAGAAGACATAATGCTGATGACATTGTAGCAACAGCACTGGCAGTGGAACCAATGAAATTTGTCTACAGGGGCAG
Seq A exon
AATAGCAGTGTTTTCAGTGAGTGTGCTGCACGATGAAAGGATAGTTATTGTTGCTGAGCAAAGGCCGGATTCCACGGAGGAAGACAGTTTTCAGTGGATGAGCAGAGTCCTGCAG
Seq C2 exon
GCTATTGACAGTATTCATCAAGTGGGAGTCTACTGCTTAGCTCTGGTACCAGCCAACACACTCCCCAAGACGCCTCTGGGAGGAATACACCTATCAGAAACCAAACAGCTTTTCTTGGAAGGGTCGCTGCATCCTTGTAACGTGCTGATGTGTCCCCACACATGCGTAACAAATCTGCCTAAACCAAGGCAAAAACAACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006652-'19-22,'19-21,20-22=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.088
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=PD(9.0=61.4)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCAGTTCTGGTGGCCCTATT
R:
GTGTGTTGGCTGGTACCAGAG
Band lengths:
258-373
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]