HsaEX6087275 @ hg19
Exon Skipping
Gene
ENSG00000151240 | DIP2C
Description
DIP2 disco-interacting protein 2 homolog C (Drosophila) [Source:HGNC Symbol;Acc:29150]
Coordinates
chr10:408430-410522:-
Coord C1 exon
chr10:410314-410522
Coord A exon
chr10:409137-409251
Coord C2 exon
chr10:408430-408631
Length
115 bp
Sequences
Splice sites
3' ss Seq
ATGCTCCTGTGTCCCCGCAGGAT
3' ss Score
13.23
5' ss Seq
CAGGTTGCC
5' ss Score
-2.52
Exon sequences
Seq C1 exon
GTGTTTCCCATGACAAGCTCCGGGGCTCCGATCAGTGAATACCCATTCATAAGGACAGGCTTGCTGGGGTTCGTGGGTCCCGGAGGCCTCGTCTTCGTGGTGGGCAAGATGGATGGCCTCATGGTGGTCAGCGGGCGCAGGCACAACGCCGACGACATCGTGGCCACTGCGCTGGCCGTAGAACCCATGAAGTTTGTCTACCGGGGAAG
Seq A exon
GATAGCCGTGTTCTCGGTGACCGTGCTGCACGACGAGAGGATCGTGATCGTGGCTGAGCAGAGGCCTGACTCCACGGAAGAGGACAGTTTCCAGTGGATGAGCCGTGTGCTGCAG
Seq C2 exon
GCGATTGACAGTATACATCAAGTTGGAGTTTATTGCCTGGCCTTGGTGCCAGCAAACACCCTCCCCAAAACCCCGCTTGGTGGGATCCATTTATCAGAAACAAAACAGCTTTTTCTGGAGGGCTCTCTGCACCCCTGCAATGTCCTAATGTGCCCCCACACCTGCGTCACAAACTTGCCTAAGCCTCGACAGAAGCAGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000151240-'26-28,'26-27,27-28=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.088
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=PD(36.8=61.4)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATAAGGACAGGCTTGCTGGG
R:
TAAATGGATCCCACCAAGCGG
Band lengths:
255-370
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)