MmuEX0014716 @ mm10
Exon Skipping
Gene
ENSMUSG00000048264 | Dip2c
Description
disco interacting protein 2 homolog C [Source:MGI Symbol;Acc:MGI:1920179]
Coordinates
chr13:9604489-9610898:+
Coord C1 exon
chr13:9604489-9604625
Coord A exon
chr13:9608944-9609058
Coord C2 exon
chr13:9610697-9610898
Length
115 bp
Sequences
Splice sites
3' ss Seq
AGTTCCATCTGTTCTTGCAGGAT
3' ss Score
9.43
5' ss Seq
CAGGTAGCA
5' ss Score
6.37
Exon sequences
Seq C1 exon
CCATCATGTGTTCAGTGAAGCCAGATGGGATTCCTCAGTTGTGCAGGACGGATGAAATCGGGGAGCTCTGTGTCTGTGCAGTTGCCACAGGAACATCATATTATGGTCTCTCTGGCATGACCAAGAACACCTTTGAG
Seq A exon
GATAGCTGTGTTCTCAGTGACTGTCCTTCATGATGAAAGGATAGTGATTGTGGCTGAGCAGAGGCCGGACTCCACAGAGGAAGACAGTTTCCAGTGGATGAGCAGAGTACTCCAG
Seq C2 exon
GCAATTGACAGTATACATCAAGTTGGAGTTTATTGCCTGGCCTTGGTACCAGCAAATACCCTTCCCAAAACCCCACTTGGTGGCATCCATTTGTCAGAAACAAAGCAGCTTTTCCTGGAGGGCTCCCTTCACCCCTGCAATGTCCTGATGTGCCCACACACCTGTGTCACAAATTTACCGAAACCTCGGCAAAAGCAGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000048264_MULTIEX1-2/2=C1-C2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.103
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=FE(9.4=100)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTGCAGGACGGATGAAATCG
R:
GTGTGGGCACATCAGGACATT
Band lengths:
257-372
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types