MmuEX0014716 @ mm9
Exon Skipping
Gene
ENSMUSG00000048264 | Dip2c
Description
DIP2 disco-interacting protein 2 homolog C (Drosophila) [Source:MGI Symbol;Acc:MGI:1920179]
Coordinates
chr13:9605569-9610144:+
Coord C1 exon
chr13:9605569-9605777
Coord A exon
chr13:9608190-9608304
Coord C2 exon
chr13:9609943-9610144
Length
115 bp
Sequences
Splice sites
3' ss Seq
AGTTCCATCTGTTCTTGCAGGAT
3' ss Score
9.43
5' ss Seq
CAGGTAGCA
5' ss Score
6.37
Exon sequences
Seq C1 exon
GTATTTCCCATGACAAGCTCCGGGGCTCCGATCAGTGAATACCCATTCATAAGGACAGGTTTGCTGGGATTTGTTGGTCCTGGGGGCCTCGTCTTTGTTGTGGGTAAGATGGACGGCCTGATGGTAGTCAGTGGAAGAAGACACAATGCAGATGACATTGTGGCCACAGCCTTAGCTGTAGAGCCCATGAAGTTTGTCTACAGAGGCAG
Seq A exon
GATAGCTGTGTTCTCAGTGACTGTCCTTCATGATGAAAGGATAGTGATTGTGGCTGAGCAGAGGCCGGACTCCACAGAGGAAGACAGTTTCCAGTGGATGAGCAGAGTACTCCAG
Seq C2 exon
GCAATTGACAGTATACATCAAGTTGGAGTTTATTGCCTGGCCTTGGTACCAGCAAATACCCTTCCCAAAACCCCACTTGGTGGCATCCATTTGTCAGAAACAAAGCAGCTTTTCCTGGAGGGCTCCCTTCACCCCTGCAATGTCCTGATGTGCCCACACACCTGTGTCACAAATTTACCGAAACCTCGGCAAAAGCAGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000048264-'24-30,'24-29,25-30
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.103
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=PD(10.1=61.4)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGATGGACGGCCTGATGGTA
R:
CAGGACATTGCAGGGGTGAAG
Band lengths:
251-366
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: