DreEX6095465 @ danRer10
Exon Skipping
Gene
ENSDARG00000062154 | dip2ca
Description
DIP2 disco-interacting protein 2 homolog Ca (Drosophila) [Source:ZFIN;Acc:ZDB-GENE-031118-39]
Coordinates
chr24:27101806-27106536:+
Coord C1 exon
chr24:27101806-27102014
Coord A exon
chr24:27103497-27103611
Coord C2 exon
chr24:27106335-27106536
Length
115 bp
Sequences
Splice sites
3' ss Seq
TTCTCTACTACCCTCTTCAGGAT
3' ss Score
8.08
5' ss Seq
CAGGTATTT
5' ss Score
7.51
Exon sequences
Seq C1 exon
GTGTTTCCCATGACCATCTCTGGGGCTCCTATCAGCGAGTATCCCTTTATCCGCACAGGGCTACTGGGCTTCATTGGTCCCGGTGGCCTGGTGTTCATCTCTGGAAAGATGGACGGTCTGATGGTGGTGAGTGGACGGAGACACAACGCTGATGATATTGTGGCCACGGCATTGGCGGTGGAGCCCATGAAGTTTGTGTACAGGGGCAG
Seq A exon
GATAGCGGTGTTTTCAGTGACGGTCCTGCATGACGAGAGGATTGTGGTGGTAGCAGAGCAGAGGCCGGACTCTACAGAAGAGGACAGCTTCCAGTGGATGAGCCGAGTGCTGCAG
Seq C2 exon
GCGATAGACAGCATCCACAACGTCGGGGTGTTTTGCTTGGCTTTGGTGCCCGCTAACACCCTACCCAAGACCCCGCTGGGAGGGATCCACCTATCGGAGACCAAGCAGCTGTTTTTGGAAGGCTCCCTGCATCCCTGTAACGTCCTAATGTGCCCTCACACCTGCGTCACCAACCTGCCCAAACCCAGACAGAAACAGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000062154-'25-28,'25-27,26-28=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.026 C2=0.103
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=PD(9.0=61.4)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGGCCTGGTGTTCATCTCTG
R:
AGCCTTCCAAAAACAGCTGCT
Band lengths:
251-366
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]