BtaEX6065462 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000004582 | COL20A1
Description
collagen, type XX, alpha 1 [Source:HGNC Symbol;Acc:HGNC:14670]
Coordinates
chr13:54743962-54744836:-
Coord C1 exon
chr13:54744694-54744836
Coord A exon
chr13:54744459-54744591
Coord C2 exon
chr13:54743962-54744123
Length
133 bp
Sequences
Splice sites
3' ss Seq
CCAGTCCCTCTTCTCCACAGATT
3' ss Score
10.22
5' ss Seq
CCGGTAGGT
5' ss Score
9.39
Exon sequences
Seq C1 exon
GGAAAGTCCCCAGCCCGAGCCAGCTGTCGGTGACAGAACTGCCTGGGGACGAAGTCCGGCTCGAGTGGGCGGCCGCGGCGGTGTCCGGCGTGCTTGTCTACCAGATCACGTGGATGCCCCTGGGAGAGGGGAAGGCCCGTGAG
Seq A exon
ATTTCTGTCCCGGGGAACCTGGGCACGGCCATCCTGCCTGGCCTGGGGAGGCACTCAGAGTATGAGATCACCATCCTGGCCTACTACCGGGACGGGGCCCGCAGTGACCCTGTGTCCCTCCGTTACACCCCCG
Seq C2 exon
TCAGCCGGAGCCCACCCTCCAACCTGGCCTTGGCCTCAGAGTCGCCTGACAGCCTGCGGGTCAGCTGGACGCCCCCGAGCAGTCACGTGCTCCACTACCGGCTCTCCTACGCGCTGGCCTCAGGCTCTGGACCCGAGAAGTCGGTGGGTCTCCCTGGAGCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000004582-'24-20,'24-19,25-20=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.229 A=0.119 C2=0.188
Domain overlap (PFAM):
C1:
PF0004116=fn3=PU(53.7=91.7)
A:
PF0004116=fn3=PD(43.9=80.0)
C2:
PF0004116=fn3=PU(61.4=92.7)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCGGTGACAGAACTGCCTG
R:
CTTCTCGGGTCCAGAGCCTG
Band lengths:
258-391
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]