RnoEX6020711 @ rn6
Exon Skipping
Gene
ENSRNOG00000010326 | Col20a1
Description
collagen type XX alpha 1 chain [Source:RGD Symbol;Acc:1563901]
Coordinates
chr3:176507754-176508733:+
Coord C1 exon
chr3:176507754-176507896
Coord A exon
chr3:176508052-176508184
Coord C2 exon
chr3:176508585-176508733
Length
133 bp
Sequences
Splice sites
3' ss Seq
CTGTACTCTCCTTTCTCCAGATC
3' ss Score
10.83
5' ss Seq
CCTGTAGGT
5' ss Score
3.22
Exon sequences
Seq C1 exon
AGAAAGCGCCTAGCCCTAGCCAGTTGTCGGTGACGGAGCTCCCGGGAGATACAGTAAAGCTGTCATGGTTGGCCACTGCCTTGTCTGGTGTACTTGTTTATCAGATCAAGTGGATGCCCTTGGGAGAGGGGAAGGCCCATGAG
Seq A exon
ATCTCTGTCCCAGGGACCCTTGGCACAGCCATCTTGCCTGGTCTGATGAAGCATGTGGAATATGAGATCACCATCCTTGCCTACTATAGGGACGGCACTCGCAGCGACCCCGTGTCCCTCCGCTACACCCCCT
Seq C2 exon
CTGCAGCAAACAGGAGCCCCCCATCCAGCCTGGCCTTGTCCTCGGAGACCCCCAACAGCCTGCAGGTCAGCTGGGCACCACCAAGTGGCCATGTCCTCCATTACCGGCTCAACTACACACTGGCCTCAGGCTCTGGACCAGAGAAATCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000010326-'20-24,'20-23,21-24=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.229 A=0.156 C2=0.230
Domain overlap (PFAM):
C1:
PF0004116=fn3=PU(53.7=91.7)
A:
PF0004116=fn3=PD(43.9=80.0)
C2:
PF0004116=fn3=PU(54.3=88.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTAGCCCTAGCCAGTTGTCGG
R:
TGAGCCGGTAATGGAGGACAT
Band lengths:
245-378
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]