BtaEX6065464 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000004582 | COL20A1
Description
collagen, type XX, alpha 1 [Source:HGNC Symbol;Acc:HGNC:14670]
Coordinates
chr13:54742674-54744123:-
Coord C1 exon
chr13:54743981-54744123
Coord A exon
chr13:54743663-54743792
Coord C2 exon
chr13:54742674-54742709
Length
130 bp
Sequences
Splice sites
3' ss Seq
TTCACCCCACCCCCGCCCAGATC
3' ss Score
6.2
5' ss Seq
CGGGTGAAT
5' ss Score
3.31
Exon sequences
Seq C1 exon
TCAGCCGGAGCCCACCCTCCAACCTGGCCTTGGCCTCAGAGTCGCCTGACAGCCTGCGGGTCAGCTGGACGCCCCCGAGCAGTCACGTGCTCCACTACCGGCTCTCCTACGCGCTGGCCTCAGGCTCTGGACCCGAGAAGTCG
Seq A exon
ATCTCCATTCCAGGACCCGGGAGCCACGTGACGATCCCTGACCTGCTGGCGGCTACCAAGTACCGGGTCCTGGTCTCAGCCATCTATGGAGCAGGGGAGAGCGTGGCGGTGTCTGCCACAGGCCGGACGG
Seq C2 exon
CCTGCCCGGCCCTCCACCTGGATGGCTCCCTCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000004582-'26-24,'26-21,28-24=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.125 A=0.102 C2=0.000
Domain overlap (PFAM):
C1:
PF0004116=fn3=PU(54.3=91.7)
A:
PF0004116=fn3=PD(43.2=79.5)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]