RnoEX6020710 @ rn6
Exon Skipping
Gene
ENSRNOG00000010326 | Col20a1
Description
collagen type XX alpha 1 chain [Source:RGD Symbol;Acc:1563901]
Coordinates
chr3:176508585-176510054:+
Coord C1 exon
chr3:176508585-176508733
Coord A exon
chr3:176508890-176509019
Coord C2 exon
chr3:176510016-176510054
Length
130 bp
Sequences
Splice sites
3' ss Seq
TCCTCCTCCTCCTCCCACAGATC
3' ss Score
12.85
5' ss Seq
CAGGTTAGT
5' ss Score
8.02
Exon sequences
Seq C1 exon
CTGCAGCAAACAGGAGCCCCCCATCCAGCCTGGCCTTGTCCTCGGAGACCCCCAACAGCCTGCAGGTCAGCTGGGCACCACCAAGTGGCCATGTCCTCCATTACCGGCTCAACTACACACTGGCCTCAGGCTCTGGACCAGAGAAATCG
Seq A exon
ATCTCTGTACCAGGCACCAGGAGCCATGTTGTACTTCGTGATCTGATGTCTGCCGCCAAGTACAGGGTCCTGGTCTCAGCTGTCTATGGAGCAGGGGAGAGCATGGCAGTGTCTGCCACATACCGCACAG
Seq C2 exon
CAGCCTGCCCAGCCCTGCACCCGGACAGTTCCCTCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000010326-'22-29,'22-25,23-29=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.230 A=0.034 C2=0.000
Domain overlap (PFAM):
C1:
PF0004116=fn3=PU(54.3=88.0)
A:
PF0004116=fn3=PD(43.2=79.5)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCAGCAAACAGGAGCCC
R:
GAGAGGGAACTGTCCGGGTG
Band lengths:
186-316
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]