BtaEX6066794 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000003256 | TOMM34
Description
translocase of outer mitochondrial membrane 34 [Source:HGNC Symbol;Acc:HGNC:15746]
Coordinates
chr13:74076067-74082628:-
Coord C1 exon
chr13:74082476-74082628
Coord A exon
chr13:74079057-74079226
Coord C2 exon
chr13:74076067-74076214
Length
170 bp
Sequences
Splice sites
3' ss Seq
CATCCTGCCTGCCTTTCCAGAAT
3' ss Score
9.97
5' ss Seq
GAGGTAAGC
5' ss Score
9.85
Exon sequences
Seq C1 exon
AGCACTGGCCCTGGTTCCCTTCAGCCTGAAGCCCCTGCTGCGGCGAGCATCGGCCTATGAGGCCCTGGAGAAGTACCCTCTGGCCTACGTGGACTACGTGACCGTGCTGCAGATTGATGACAGCGTGATGTCAGCCTTGGAAGGCAGCAGCAG
Seq A exon
AATGACCAGAACTCTCATGGACTCCTTTGGGCCCGAGTGGCGCCTGAAGCTGCCCTCTATCCCCTTGGTGCCTGTTTCATCTCAGAAGAGGTGGGAGTGTCTGCCTTTGGAAAACCACAAAGAGCCATCTAAAAGCAAATCCAAAGGAACCACAAGCACGAAGAGCAGAG
Seq C2 exon
TGCCTTCTGCTGGGGATGTGGAGAGAGCCAGAGCTCTGAAGGAGGAAGGCAATGAGCTTGTAAAGAAGGGGAACCATAAGCAAGCGATTGAGAAGTACAGTGAGAGCCTCTGGTTTAGTAACTTGGAATCCGCCACATACAGCAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000003256-'7-5,'7-4,8-5=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.016 A=0.293 C2=0.420
Domain overlap (PFAM):
C1:
PF134141=TPR_11=PD(7.9=11.5),PF0051523=TPR_1=WD(100=61.5)
A:
NO
C2:
PF134141=TPR_11=PU(61.8=84.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGAGGCCCTGGAGAAGTACC
R:
CTGTTGCTGTATGTGGCGGAT
Band lengths:
245-415
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]