RnoEX0092723 @ rn6
Exon Skipping
Gene
ENSRNOG00000029799 | Tomm34
Description
translocase of outer mitochondrial membrane 34 [Source:RGD Symbol;Acc:1309029]
Coordinates
chr3:160452963-160459557:-
Coord C1 exon
chr3:160459405-160459557
Coord A exon
chr3:160455377-160455546
Coord C2 exon
chr3:160452963-160453110
Length
170 bp
Sequences
Splice sites
3' ss Seq
AAGTCATCCTTGCCTTCCAGAAT
3' ss Score
6.35
5' ss Seq
GAGGTGAGC
5' ss Score
8.7
Exon sequences
Seq C1 exon
AGCACTGGCCTTGGTTCCCTTCAGCATCAAGCCCTTGCTGCGAAGAGCATCTGCATATGAAGCTCTGGAGAAGTACTCCCTGGCCTATGTCGACTATAAGACTGTGCTGCAGATCGACAACAGTGTGGCATCAGCCCTGGAAGGCATCAACAG
Seq A exon
AATAACCAGAGCTCTCATGGACTCCCTTGGACCTGAGTGGCGCCTCAAGCTGCCCCCTATCCCTGTGGTGCCTGTGTCAGCCCAGAAGAGATGGAGTTCCTTGCCTTCGGAGAACCACAAAGAGACAGCTAAAAGCAAATCCAAAGAAACCACAGCTACGAAGAACAGAG
Seq C2 exon
TGCCTTCTGCTGGGGATGTGGAGAGAGCCAGAGTTCTGAAGGAAGAAGGCAATGAGCTTGTAAAGAAAGGCAACCATAAGAAAGCTATTGAGAAGTACAGTGAAAGCCTCTTGTTTAGTAGCCTGGAATCTGCCACATACAGCAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000029799-'5-9,'5-7,7-9
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.448 C2=0.340
Domain overlap (PFAM):
C1:
PF134141=TPR_11=PD(7.9=11.5),PF0051523=TPR_1=WD(100=63.5)
A:
PF0499812=RNA_pol_Rpb1_5=PU(21.4=58.6)
C2:
PF0499812=RNA_pol_Rpb1_5=FE(30.8=100),PF134141=TPR_11=PU(61.8=84.0)
Main Skipping Isoform:
ENSRNOT00000040156fB15473
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCATCTGCATATGAAGCTCTGG
R:
TGTGGCAGATTCCAGGCTACT
Band lengths:
245-415
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]