HsaEX6078323 @ hg38
Exon Skipping
Gene
ENSG00000025772 | TOMM34
Description
translocase of outer mitochondrial membrane 34 [Source:HGNC Symbol;Acc:HGNC:15746]
Coordinates
chr20:44948730-44955220:-
Coord C1 exon
chr20:44955068-44955220
Coord A exon
chr20:44951833-44952002
Coord C2 exon
chr20:44948730-44948877
Length
170 bp
Sequences
Splice sites
3' ss Seq
AATCCTGCCTTCTTTTCCAGAAT
3' ss Score
10.29
5' ss Seq
GAGGTGAGC
5' ss Score
8.7
Exon sequences
Seq C1 exon
AGCACTGGCCTTGGTTCCCTTCAGCATTAAGCCCCTGCTGCGGCGAGCATCTGCTTATGAGGCTCTGGAGAAGTACCCTATGGCCTATGTTGACTATAAGACTGTGCTGCAGATTGATGATAATGTGACGTCAGCCGTAGAAGGCATCAACAG
Seq A exon
AATGACCAGAGCTCTCATGGACTCGCTTGGGCCTGAGTGGCGCCTGAAGCTGCCCTCAATCCCCTTGGTGCCTGTTTCAGCTCAGAAGAGGTGGAATTCCTTGCCTTCGGAGAACCACAAAGAGATGGCTAAAAGCAAATCCAAAGAAACCACAGCTACAAAGAACAGAG
Seq C2 exon
TGCCTTCTGCTGGGGATGTGGAGAAAGCCAGAGTTCTGAAGGAAGAAGGCAATGAGCTTGTAAAGAAGGGAAACCATAAGAAAGCTATTGAGAAGTACAGTGAAAGCCTCTTGTGTAGTAACCTGGAATCTGCCACGTACAGCAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000025772-'11-8,'11-5,13-8
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.440 C2=0.340
Domain overlap (PFAM):
C1:
PF134141=TPR_11=PD(7.9=11.5),PF0051523=TPR_1=WD(100=65.4)
A:
NO
C2:
PF134141=TPR_11=PU(61.8=84.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAGGCTCTGGAGAAGTACCC
R:
CTGTTGCTGTACGTGGCAGAT
Band lengths:
244-414
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains