GgaEX6022849 @ galGal3
Exon Skipping
Gene
ENSGALG00000004110 | TOMM34
Description
NA
Coordinates
chr20:5189495-5190959:+
Coord C1 exon
chr20:5189495-5189647
Coord A exon
chr20:5190432-5190592
Coord C2 exon
chr20:5190815-5190959
Length
161 bp
Sequences
Splice sites
3' ss Seq
CCACCAGCCATCTCTTCCAGGAT
3' ss Score
7.31
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
Exon sequences
Seq C1 exon
CGCGCTCAGCCTGACCCCGTTTGCCATCAAGCCTCTGCTCAGGAGAGCGGCTGCCTATGAGGCCCTGGAGAGCTTTGCGTTGGCCTACGTGGACTATAAGACCGCACTGCAGGTGGACTGCTCCATACAGGCGGCCCACGATGGGGTCAACAG
Seq A exon
GATGACCAAAGCTCTGCTGGAGAAGCACGGGGTGAACTGGCGTGAGAAGCTCCCACCCATCCCCACGGTCCCCATTGATGCCCAGAGGAGATGGAGCGTTCCTTCTGCAGGATCCCCCACAGGAGGTGCTCCCCCTGGAAACACACCACGGGGAGACCCAG
Seq C2 exon
CCCAGACTGCTGCTGGCATAGAGAGAGCTCAAACTCTTAAGGAAGAAGGAAACAAACTCGTAAAGAAAGGAAACCATAAGAAGGCAATTGAGAAGTACAGTGAGAGTTTAAAGCTGAACCAGGAATGTGCAACTTACACCAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004110-'2-5,'2-4,3-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.527 C2=0.449
Domain overlap (PFAM):
C1:
PF134141=TPR_11=PD(7.9=11.5),PF0051523=TPR_1=WD(100=59.6)
A:
NO
C2:
PF0051523=TPR_1=WD(100=69.4),PF134141=TPR_11=PU(11.8=16.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGAGCGGCTGCCTATGAGG
R:
TGCACATTCCTGGTTCAGCTT
Band lengths:
242-403
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]