MmuEX6106811 @ mm10
Exon Skipping
Gene
ENSMUSG00000018322 | Tomm34
Description
translocase of outer mitochondrial membrane 34 [Source:MGI Symbol;Acc:MGI:1914395]
Coordinates
chr2:164054701-164065044:-
Coord C1 exon
chr2:164064892-164065044
Coord A exon
chr2:164060839-164061008
Coord C2 exon
chr2:164054701-164054827
Length
170 bp
Sequences
Splice sites
3' ss Seq
ACTTCGTCCTTGCCTTCCAGAAT
3' ss Score
10.04
5' ss Seq
GAGGTGAGC
5' ss Score
8.7
Exon sequences
Seq C1 exon
CGCGCTGGCCTTGGTTCCCTTCAGCATCAAGCCCTTGCTGCGCAGAGCATCTGCATATGAAGCCCTGGAGAAGTACGCCCTGGCCTACGTTGACTATAAGACTGTGCTGCAGATCGATAACAGTGTGGCATCCGCCCTGGAAGGCATCAACAG
Seq A exon
AATAACCAGAGCTCTCATGGACTCCCTGGGACCTGAGTGGCGCCTGAAGCTGCCCCCTATCCCTGTGGTGCCTGTTTCAGCCCAGAAGAGATGGAATTCCTTGCCTTCAGATAACCACAAAGAGACAGCTAAAACCAAATCCAAAGAAGCCACAGCTACGAAGAGCAGAG
Seq C2 exon
AGCGCTCTGTCACCTGGTCCTGAAGCAGTACAAGGAGGCAGTAAAGGACTGCACAGAAGCCCTCAAGCTGGATGGGAAGAATGTAAAGGCGTTTTACAGACGGGCTCAAGCCTACAAGGCACTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000018322_MULTIEX1-1/3=C1-3
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.448 C2=0.000
Domain overlap (PFAM):
C1:
PF134141=TPR_11=PD(7.9=11.5),PF0051523=TPR_1=WD(100=63.5)
A:
NO
C2:
PF134141=TPR_11=PD(36.8=58.1),PF148531=Fis1_TPR_C=PU(27.1=30.2)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGTTCCCTTCAGCATCAAGC
R:
TTGAGCCCGTCTGTAAAACGC
Band lengths:
251-421
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types