DreEX6024304 @ danRer10
Exon Skipping
Gene
ENSDARG00000001557 | tomm34
Description
translocase of outer mitochondrial membrane 34 [Source:ZFIN;Acc:ZDB-GENE-030131-2081]
Coordinates
chr6:52227733-52232025:-
Coord C1 exon
chr6:52231873-52232025
Coord A exon
chr6:52227957-52228114
Coord C2 exon
chr6:52227733-52227880
Length
158 bp
Sequences
Splice sites
3' ss Seq
GTAAAACTCTTTCCTTTTAGAAT
3' ss Score
8.04
5' ss Seq
AAGGTATTT
5' ss Score
7.64
Exon sequences
Seq C1 exon
GTCGCTTGACTTGGTTCCATTTGGATTTAAAGCTCTGCTACGCCGTGCAGCAGCTTTTGAAGCTTTGGAGAGATACCGACAAGCATATGTGGACTACAAAACAGTTTTACAGATCGACTGGAACATACCAGCTGCTCACGATGGAGTCAACAG
Seq A exon
AATGACCAAGGCTTTGACAGAAATGGATGGACCATCATGGCGAGAGAAACTGCCCCCGATTCCTACCGTTCCAATGTCCGTAAAGGAAAAGTTAGGACAAGCCGCCAGTCCAGCCTCCAGCTCACAACAGAACAACGTGATCGACGACAAGAAAAAAG
Seq C2 exon
CACCAGGACCAGACGCTGTTAAAAAGGGCAGAACTTTAAAGGAAGAAGGCAACGCACTTGTGAAGAAGGGGGAACACAAGAAAGCCATGGAGAAGTACACACAGTCACTTGCTCAAGACCCCACAGAAGTCACAACCTACACAAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000001557-'4-4,'4-3,8-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.019 A=0.907 C2=0.740
Domain overlap (PFAM):
C1:
PF134141=TPR_11=PD(8.0=11.5),PF0051523=TPR_1=WD(100=59.6)
A:
NO
C2:
PF134141=TPR_11=PU(61.8=84.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTAAAGCTCTGCTACGCCGTG
R:
GGGGTCTTGAGCAAGTGACTG
Band lengths:
249-407
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]