MmuEX6106811 @ mm9
Exon Skipping
Gene
ENSMUSG00000018322 | Tomm34
Description
translocase of outer mitochondrial membrane 34 [Source:MGI Symbol;Acc:MGI:1914395]
Coordinates
chr2:163884402-163890780:-
Coord C1 exon
chr2:163890628-163890780
Coord A exon
chr2:163886575-163886744
Coord C2 exon
chr2:163884402-163884549
Length
170 bp
Sequences
Splice sites
3' ss Seq
ACTTCGTCCTTGCCTTCCAGAAT
3' ss Score
10.04
5' ss Seq
GAGGTGAGC
5' ss Score
8.7
Exon sequences
Seq C1 exon
CGCGCTGGCCTTGGTTCCCTTCAGCATCAAGCCCTTGCTGCGCAGAGCATCTGCATATGAAGCCCTGGAGAAGTACGCCCTGGCCTACGTTGACTATAAGACTGTGCTGCAGATCGATAACAGTGTGGCATCCGCCCTGGAAGGCATCAACAG
Seq A exon
AATAACCAGAGCTCTCATGGACTCCCTGGGACCTGAGTGGCGCCTGAAGCTGCCCCCTATCCCTGTGGTGCCTGTTTCAGCCCAGAAGAGATGGAATTCCTTGCCTTCAGATAACCACAAAGAGACAGCTAAAACCAAATCCAAAGAAGCCACAGCTACGAAGAGCAGAG
Seq C2 exon
TGCCTTCTGCTGGGGATGTGGAGAGAGCCAAAGCTCTGAAGGAAGAAGGCAATGACCTTGTAAAGAAGGGCAACCATAAGAAAGCTATTGAGAAGTACAGTGAGAGCCTCTTGTGTAGTAGCCTGGAGTCTGCCACATACAGCAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000018322-'3-5,'3-4,4-5=AN
Average complexity
A_S
Mappability confidence:
71%=50=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.448 C2=0.380
Domain overlap (PFAM):
C1:
PF134141=TPR_11=PD(7.9=11.5),PF0051523=TPR_1=WD(100=63.5)
A:
PF0499812=RNA_pol_Rpb1_5=PU(20.9=56.9)
C2:
PF134141=TPR_11=PU(61.8=84.0),PF0499812=RNA_pol_Rpb1_5=FE(31.0=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCATCTGCATATGAAGCCCTG
R:
GGCAGACTCCAGGCTACTACA
Band lengths:
242-412
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: