BtaEX6066984 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000003635 | SLC35C2
Description
solute carrier family 35 (GDP-fucose transporter), member C2 [Source:HGNC Symbol;Acc:HGNC:17117]
Coordinates
chr13:75801741-75805098:-
Coord C1 exon
chr13:75805026-75805098
Coord A exon
chr13:75804318-75804486
Coord C2 exon
chr13:75801741-75801916
Length
169 bp
Sequences
Splice sites
3' ss Seq
CCCCCGCCCTCTGCTTTCAGCGC
3' ss Score
11.99
5' ss Seq
TTGGTGAGC
5' ss Score
7.43
Exon sequences
Seq C1 exon
GTACACGATGACCAAGTCCTCAGCCGTCCTCTTCATCCTCATCTTCTCTCTGATCTTCAAGCTGGAGGAGCTG
Seq A exon
CGCGCGGCGCTAGTCTTGGTGGTCCTGCTCATCGCCGGGGGCCTCTTCATGTTCACCTACAAGTCGACGCAGTTCAACATCGAGGGCTTCGCCTTGGTGCTGGGTGCCTCTTTCATCGGCGGCATTCGCTGGACCCTCACCCAGATGCTCCTGCAGAAGGCGGAACTTG
Seq C2 exon
GTCTCCATTTGTCCACATCTGAGAAAATCTTCCGTTTCCAGGACACAGGGCTGCTCCTGCGGGTGCTCGGGAGCCTCTTCCTTGGCGGGATTCTCGCCTTTGGTTTGGGCTTCTCTGAGTTCCTCCTGGTCTCCAGGACCTCCAGCCTCACTCTCTCCATTGCTGGCATTTTTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000003635-'6-8,'6-5,8-8=AN
Average complexity
A_C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF084496=UAA=FE(19.0=100)
A:
PF084496=UAA=FE(44.4=100),PF0315111=TPT=PU(75.7=49.1),PF0315111=TPT=PU(0.1=0.0)
C2:
PF084496=UAA=PD(7.9=16.9),PF0315111=TPT=PD(21.6=13.6),PF0315111=TPT=PU(61.1=98.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CACGATGACCAAGTCCTCAGC
R:
AAAATGCCAGCAATGGAGAGAGT
Band lengths:
242-411
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]